Squalene-hopene cyclase explained

Squalene-hopene cyclase
Ec Number:5.4.99.17
Cas Number:76600-69-6

Squalene-hopene cyclase (SHC) or hopan-22-ol hydro-lyase is an enzyme in the terpene cyclase/mutase family. It catalyzes the interconversion of squalene into a pentacyclic triterpenes, hopene and hopanol.[1] [2] [3] [4] [5] This enzyme catalyses the following chemical reactions.

\rightleftharpoons

hop-22(29)-ene

squalene + H2O

\rightleftharpoons

hopan-22-ol

SHC is important because its products, hopanoids, are very much like sterols in eukaryotes in that they condense lipid membranes and reduce permeability. In fact, SHC and sterol-producing enzymes (oxidosqualene cyclase) are evolutionarily related to each other.[6] Hopanoids are inferred to provide stability in the face of high temperatures and extreme acidity due to the rigid ring structure.[7] Indeed, up-regulation of SHC occurs in certain bacteria in the presence of hot or acidic environments.[8] [9] SHC is found mostly in bacteria, but some eukaryotes, such as fungi and land plants, are also known to possess the enzyme.

Introduction

SHC is found in a large number of bacteria but is most readily isolated from the thermophilic bacterium Alicyclobacillus acidocaldarius.[10]

SHC does not require molecular oxygen for its reaction and is thought to be an evolutionary progenitor of oxygen-dependent oxidosqualene cyclase (OSC), which produces tetracyclic sterols. OSC is a eukaryotic analog of SHC and requires molecular oxygen for its catalysis. This may suggest a later evolution of OSC relative to SHC, when the atmosphere began accumulating oxygen,[11] although the distribution of SHC is also limited mostly to aerobic species.

Structure

Squalene-hopene cyclase is a membrane-associated 70-75kDa protein composed of 631 amino acids and seven PTFB repeats. It exists as a monotopic homodimer.

Mechanism

The formation of the hopene skeleton is one of the most complex single-step reactions in biochemistry.[12] In a single step, 13 covalent bonds are broken or formed, 9 chiral centers are established, and 5 rings are produced.[13] Squalene–hopene cyclase catalyses the conversion of the acyclic molecule of squalene into the pentacyclic triterpenes of hopene and hopanol. These products appear in the ratio 5:1. Hopene synthesis begins with binding squalene in an all pre-chair conformation and is followed by the formation of five C-C bonds.[14] These sequential ring-forming reaction steps are initiated by an electrophilic attack of an acidic proton on one of the two terminal double bonds. The polycyclic formation is completed when a proton is eliminated from the alternative terminal methyl group of squalene via acceptance by a water molecule.[4] This base is known as the front water. Other water molecules work to enhance polarization (back waters) and construct hydrogen bonds between seven residues—T41, E45, E93, R127, Q262, W133 and Y267. Front water also plays a role in determining the end product. If it stores the proton generated from either Methyl group 29 or 30 to form hopene. However, hopanol is produced in lesser quantities if instead of accepting the proton, water contributes a hydroxyl to the C-22 cation of the A-ring.[15]

During the formation of rings A through D, there is very little conformational change. The reaction therefore requires no intermediate and can take place in one step. However, ring E formation is hindered by an entropic barrier, which may explain its absence in the tetracyclic steroids.

Active site

The SHC active site is located in a central cavity within the region of the protein adjacent to the membrane, and is accessed by the substrate via a non-polar channel.[16] The active site is notably surrounded by aromatic residues forming a cavity that comfortably fits the squalene molecule when folded into a productive conformation. The catalytic mechanism uses coupled aspartate and histidine residues to initiate the cyclization reaction by protonating at C3 and deprotonating at C29, proceeding through a discrete series of carbocation intermediates.[17] [18] The enzyme can be inactivated by mutation of catalytic aspartates.[19]

Thermodynamics

This enzyme is unusually exothermic with an energy release of 40-50kcal/mol, well beyond the protein stabilization energy. This is thought to melt a lipid side channel through which the bulky product exits. In order to maintain its structural integrity, some scientists believe that the enzyme’s 7-8 non-tandem repeat QW motifs (Q is glutamine and W is tryptophan) that connect numerous surface α helices tighten the protein structure and prevent denaturing.

Notes and References

  1. Hoshino T, Sato T . Squalene-hopene cyclase: catalytic mechanism and substrate recognition . Chemical Communications . 4 . 291–301 . February 2002 . 12120044 . 10.1039/b108995c .
  2. Hoshino T, Nakano S, Kondo T, Sato T, Miyoshi A . Squalene-hopene cyclase: final deprotonation reaction, conformational analysis for the cyclization of (3R,S)-2,3-oxidosqualene and further evidence for the requirement of an isopropylidene moiety both for initiation of the polycyclization cascade and for the formation of the 5-membered E-ring . Organic & Biomolecular Chemistry . 2 . 10 . 1456–70 . May 2004 . 15136801 . 10.1039/b401172d .
  3. Sato T, Kouda M, Hoshino T . Site-directed mutagenesis experiments on the putative deprotonation site of squalene-hopene cyclase from Alicyclobacillus acidocaldarius . Bioscience, Biotechnology, and Biochemistry . 68 . 3 . 728–38 . March 2004 . 15056909 . 10.1271/bbb.68.728 . free .
  4. Reinert DJ, Balliano G, Schulz GE . Conversion of squalene to the pentacarbocyclic hopene . Chemistry & Biology . 11 . 1 . 121–6 . January 2004 . 15113001 . 10.1016/j.chembiol.2003.12.013 . free .
  5. Pearson A, Budin M, Brocks JJ . Phylogenetic and biochemical evidence for sterol synthesis in the bacterium Gemmata obscuriglobus . Proceedings of the National Academy of Sciences of the United States of America . 100 . 26 . 15352–7 . December 2003 . 14660793 . 307571 . 10.1073/pnas.2536559100 . 2003PNAS..10015352P . free .
  6. Santana-Molina . Carlos . Rivas-Marin . Elena . Rojas . Ana M . Devos . Damien P . 2020-07-01 . Ursula Battistuzzi . Fabia . Origin and Evolution of Polycyclic Triterpene Synthesis . Molecular Biology and Evolution . en . 37 . 7 . 1925–1941 . 10.1093/molbev/msaa054 . 0737-4038 . 7306690 . 32125435.
  7. Hopanoid biosynthesis and function in bacteria . Kannenberg, E. . Poralla, K. . Naturwissenschaften . 1999 . 86 . 4 . 168–176 . 10.1007/s001140050592. 1999NW.....86..168K . 21596134 .
  8. Ourisson G, Rohmer M, Poralla K . Prokaryotic hopanoids and other polyterpenoid sterol surrogates . Annual Review of Microbiology . 41 . 301–33 . 1987 . 3120639 . 10.1146/annurev.mi.41.100187.001505 .
  9. Sahm H, Rohmer M, Bringer-Meyer S, Sprenger GA, Welle R . Biochemistry and physiology of hopanoids in bacteria . Advances in Microbial Physiology . 35 . 247–73 . 1993 . 8310881 . 10.1016/s0065-2911(08)60100-9 . 9780120277353 .
  10. Characterization and partial purification of squalene-hopene cyclase from Bacillus acidocaldarius . Seckler, B. . Poralla, K. . Biochimica et Biophysica Acta (BBA) - General Subjects . 1986 . 881 . 3 . 356–363 . 10.1016/0304-4165(86)90027-9.
  11. Rohmer, M. . Bouvier, G. . Ourisson, G. . 1979 . Molecular evolution of biomembranes: structural equivalents and phylogenetic precursors of sterols . Proceedings of the National Academy of Sciences . 76 . 2 . 847–851 . 1979PNAS...76..847R . 10.1073/pnas.76.2.847 . 383070 . 284408 . free.
  12. Siedenburg G, Jendrossek D . Squalene-hopene cyclases . Applied and Environmental Microbiology . 77 . 12 . 3905–15 . June 2011 . 21531832 . 3131620 . 10.1128/aem.00300-11 . 2011ApEnM..77.3905S .
  13. Corey EJ, Matsuda SP, Bartel B . Isolation of an Arabidopsis thaliana gene encoding cycloartenol synthase by functional expression in a yeast mutant lacking lanosterol synthase by the use of a chromatographic screen . Proceedings of the National Academy of Sciences of the United States of America . 90 . 24 . 11628–32 . December 1993 . 7505443 . 48037 . 10.1073/pnas.90.24.11628 . 1993PNAS...9011628C . free .
  14. Zheng YF, Abe I, Prestwich GD . Inhibition kinetics and affinity labeling of bacterial squalene:hopene cyclase by thia-substituted analogues of 2, 3-oxidosqualene . Biochemistry . 37 . 17 . 5981–7 . April 1998 . 9558334 . 10.1021/bi9727343 .
  15. Web site: BRENDA - Information on EC 4.2.1.129 - squalene-hopanol cyclase.
  16. Gao Y, Honzatko RB, Peters RJ . Terpenoid synthase structures: a so far incomplete view of complex catalysis . Natural Product Reports . 29 . 10 . 1153–75 . October 2012 . 22907771 . 10.1039/C2NP20059G . 3448952 .
  17. Wendt KU, Poralla K, Schulz GE . Structure and function of a squalene cyclase . Science . 277 . 5333 . 1811–5 . September 1997 . 9295270 . 10.1126/science.277.5333.1811 .
  18. Hoshino T, Sato T . Squalene-hopene cyclase: catalytic mechanism and substrate recognition . Chemical Communications . 4 . 291–301 . February 2002 . 12120044 . 10.1039/B108995C .
  19. Site-directed mutagenesis of putative active-site residues in squalene-hopene cyclase . Feil, C. . Sussmuth, R. . Jung, G.. European Journal of Biochemistry . 1996 . 242 . 1 . 51–55 . 8954152. 10.1111/j.1432-1033.1996.0051r.x. etal. free .

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