Taxonomic rank explained

In biology, taxonomic rank is the relative level of a group of organisms (a taxon) in an ancestral or hereditary hierarchy. A common system of biological classification (taxonomy) consists of species, genus, family, order, class, phylum, kingdom, and domain. While older approaches to taxonomic classification were phenomenological, forming groups on the basis of similarities in appearance, organic structure and behavior, methods based on genetic analysis have opened the road to cladistics, a method of classification of animals and plants according to the proportion of measurable or like characteristics that they have in common. it is assumed that the higher the proportion of characteristics that two organisms share, the more recently they both came from a common ancestor.

A given rank subsumes less general categories under it, that is, more specific descriptions of life forms. Above it, each rank is classified within more general categories of organisms and groups of organisms related to each other through inheritance of traits or features from common ancestors. The rank of any species and the description of its genus is basic; which means that to identify a particular organism, it is usually not necessary to specify ranks other than these first two.[1]

Consider a particular species, the red fox, Vulpes vulpes: the specific name or specific epithet vulpes (small v) identifies a particular species in the genus Vulpes (capital V) which comprises all the "true" foxes. Their close relatives are all in the family Canidae, which includes dogs, wolves, jackals, and all foxes; the next higher major rank, the order Carnivora, includes caniforms (bears, seals, weasels, skunks, raccoons and all those mentioned above), and feliforms (cats, civets, hyenas, mongooses). Carnivorans are one group of the hairy, warm-blooded, nursing members of the class Mammalia, which are classified among animals with notochords in the phylum Chordata, and with them among all animals in the kingdom Animalia. Finally, at the highest rank all of these are grouped together with all other organisms possessing cell nuclei in the domain Eukarya.

The International Code of Zoological Nomenclature defines rank as: "The level, for nomenclatural purposes, of a taxon in a taxonomic hierarchy (e.g. all families are for nomenclatural purposes at the same rank, which lies between superfamily and subfamily)."

Main ranks

In his landmark publications, such as the Systema Naturae, Carl Linnaeus used a ranking scale limited to kingdom, class, order, genus, species, and one rank below species. Today, the nomenclature is regulated by the nomenclature codes. There are seven main taxonomic ranks: kingdom, phylum or division, class, order, family, genus, and species. In addition, domain (proposed by Carl Woese) is now widely used as a fundamental rank, although it is not mentioned in any of the nomenclature codes, and is a synonym for dominion (Latin: dominium), introduced by Moore in 1974.[2] [3]

Main taxonomic ranks
LatinEnglish
Latin: regiodomain
Latin: regnumkingdom
Latin: phylumphylum (in zoology) / division (in botany)
Latin: classisclass
Latin: ordoorder
Latin: familiafamily
Latin: genusgenus
Latin: speciesspecies

A taxon is usually assigned a rank when it is given its formal name. The basic ranks are species and genus. When an organism is given a species name it is assigned to a genus, and the genus name is part of the species name.

The species name is also called a binomial, that is, a two-term name. For example, the zoological name for the human species is Homo sapiens. This is usually italicized in print or underlined when italics are not available. In this case, Homo is the generic name and it is capitalized; sapiens indicates the species and it is not capitalized. While not always used, some species include a specific epithet. For instance, modern humans are Homo sapiens sapiens, or H. sapiens sapiens.

Ranks in zoology

There are definitions of the following taxonomic ranks in the International Code of Zoological Nomenclature: superfamily, family, subfamily, tribe, subtribe, genus, subgenus, species, subspecies.[4]

The International Code of Zoological Nomenclature divides names into "family-group names", "genus-group names" and "species-group names". The Code explicitly mentions the following ranks for these categories:[4]

The rules in the Code apply to the ranks of superfamily to subspecies, and only to some extent to those above the rank of superfamily. Among "genus-group names" and "species-group names" no further ranks are officially allowed. Zoologists sometimes use additional terms such as species group, species subgroup, species complex and superspecies for convenience as extra, but unofficial, ranks between the subgenus and species levels in taxa with many species, e.g. the genus Drosophila. (Note the potentially confusing use of "species group" as both a category of ranks as well as an unofficial rank itself.)

At higher ranks (family and above) a lower level may be denoted by adding the prefix "infra", meaning lower, to the rank. For example, infraorder (below suborder) or infrafamily (below subfamily).

Names of zoological taxa

Ranks in botany

Botanical ranks categorize organisms based on their relationships. They start with Kingdom, then move to Division (or Phylum),[5] Class, Order, Family, Genus, and Species. Each rank reflects shared characteristics and evolutionary history. Understanding these ranks aids in taxonomy and studying biodiversity.

Ranks in ICN[6]
Rank Type Suffix
kingdom (regnum)primary
subregnum further
division (divisio)
phylum (phylum)
primary ‑phyta
-mycota (fungi)
subdivisio or subphylum further ‑phytina
-mycotina (fungi)
class (classis)primary ‑opsida (plant)
‑phyceae (algae)
-mycetes (fungi)
subclassis further ‑idae (plant)
‑phycidae (algae)
-mycetidae (fungi)
order (ordo)primary -ales
subordo further -ineae
family (familia)primary -aceae
subfamilia further ‑oideae
tribe (tribus)secondary -eae
subtribus further ‑inae
genus (genus)primary
subgenus further
section (sectio)secondary
subsectio further
series (series)secondary
subseries further
species (species)primary
subspecies further
variety (varietas)secondary
subvarietas further
form (forma)secondary
subforma further

There are definitions of the following taxonomic categories in the International Code of Nomenclature for Cultivated Plants: cultivar group, cultivar, grex.

The rules in the ICN apply primarily to the ranks of family and below, and only to some extent to those above the rank of family.

Names of botanical taxa

Taxa at the rank of genus and above have a botanical name in one part (unitary name); those at the rank of species and above (but below genus) have a botanical name in two parts (binary name); all taxa below the rank of species have a botanical name in three parts (an infraspecific name). To indicate the rank of the infraspecific name, a "connecting term" is needed. Thus Poa secunda subsp. juncifolia, where "subsp". is an abbreviation for "subspecies", is the name of a subspecies of Poa secunda.[7]

Hybrids can be specified either by a "hybrid formula" that specifies the parentage, or may be given a name. For hybrids receiving a hybrid name, the same ranks apply, prefixed with notho (Greek: 'bastard'), with nothogenus as the highest permitted rank.[8]

Outdated names for botanical ranks

If a different term for the rank was used in an old publication, but the intention is clear, botanical nomenclature specifies certain substitutions:

Examples

Classifications of five species follow: the fruit fly familiar in genetics laboratories (Drosophila melanogaster), humans (Homo sapiens), the peas used by Gregor Mendel in his discovery of genetics (Pisum sativum), the "fly agaric" mushroom Amanita muscaria, and the bacterium Escherichia coli. The eight major ranks are given in bold; a selection of minor ranks are given as well.

RankFruit flyHumanPeaFly agaricE. coli
DomainEukaryaEukaryaEukaryaEukaryaBacteria
KingdomAnimaliaAnimaliaPlantaeFungiPseudomonadati[9]
Phylum or divisionArthropodaChordataMagnoliophyta (Tracheophyta)BasidiomycotaPseudomonadota
Subphylum or subdivisionHexapodaVertebrataMagnoliophytina (Euphyllophytina)Agaricomycotina
ClassInsectaMammaliaMagnoliopsida (Equisetopsida)AgaricomycetesGammaproteobacteria
SubclassPterygotaTheriaRosidae (Magnoliidae)Agaricomycetidae
SuperorderPanorpidaEuarchontogliresRosanae
OrderDipteraPrimatesFabalesAgaricalesEnterobacterales
SuborderBrachyceraHaplorrhiniFabineaeAgaricineae
FamilyDrosophilidaeHominidaeFabaceaeAmanitaceaeEnterobacteriaceae
SubfamilyDrosophilinaeHomininaeFaboideaeAmanitoideae
TribeDrosophiliniHomininiFabeae
GenusDrosophilaHomoPisumAmanitaEscherichia
SpeciesD. melanogasterH. sapiensP. sativumA. muscariaE. coli
Table notes

Terminations of names

Taxa above the genus level are often given names based on the type genus, with a standard termination. The terminations used in forming these names depend on the kingdom (and sometimes the phylum and class) as set out in the table below.

Pronunciations given are the most Anglicized. More Latinate pronunciations are also common, particularly rather than for stressed a.

RankBacteria and Archaea[10] Embryophytes (Plants)Algae (Diaphoretickes)FungiAnimalsViruses[11]
Realm-viria
Subrealm-vira
Kingdom-ati[12] -virae
Subkingdom-viretes
Division/phylum-ota[13] -ophyta[14] -mycota -viricota
Subdivision/subphylum-phytina -mycotina -viricotina
Class-ia -opsida -phyceae -mycetes -viricetes
Subclass- -phycidae -mycetidae -viricetidae
Superorder-anae
Order-ales -ida or -iformes -virales
Suborder-ineae -virineae
Infraorder-aria
Superfamily-acea -oidea
Epifamily-oidae
Family-aceae - -viridae
Subfamily-oideae -inae -virineae
Infrafamily-odd [15]
Tribe-eae -ini
Subtribe-inae -ina
Infratribe-ad or -iti
Genus-virus
Subgenus-virus
Table notes:

All ranks

There is an indeterminate number of ranks, as a taxonomist may invent a new rank at will, at any time, if they feel this is necessary. In doing so, there are some restrictions, which will vary with the nomenclature code that applies.

The following is an artificial synthesis, solely for purposes of demonstration of relative rank (but see notes), from most general to most specific:[19]

Significance and problems

Ranks are assigned based on subjective dissimilarity, and do not fully reflect the gradational nature of variation within nature. In most cases, higher taxonomic groupings arise further back in time: not because the rate of diversification was higher in the past, but because each subsequent diversification event results in an increase of diversity and thus increases the taxonomic rank assigned by present-day taxonomists.[24] Furthermore, some groups have many described species not because they are more diverse than other species, but because they are more easily sampled and studied than other groups.

Of these many ranks, the most basic is species. However, this is not to say that a taxon at any other rank may not be sharply defined, or that any species is guaranteed to be sharply defined. It varies from case to case. Ideally, a taxon is intended to represent a clade, that is, the phylogeny of the organisms under discussion, but this is not a requirement.

A classification in which all taxa have formal ranks cannot adequately reflect knowledge about phylogeny. Since taxon names are dependent on ranks in traditional Linnaean systems of classification, taxa without ranks cannot be given names. Alternative approaches, such as using circumscriptional names, avoid this problem.[25] [26] The theoretical difficulty with superimposing taxonomic ranks over evolutionary trees is manifested as the boundary paradox which may be illustrated by Darwinian evolutionary models.

There are no rules for how many species should make a genus, a family, or any other higher taxon (that is, a taxon in a category above the species level).[27] [28] It should be a natural group (that is, non-artificial, non-polyphyletic), as judged by a biologist, using all the information available to them. Equally ranked higher taxa in different phyla are not necessarily equivalent (e.g., it is incorrect to assume that families of insects are in some way evolutionarily comparable to families of mollusks). For animals, at least the phylum rank is usually associated with a certain body plan, which is also, however, an arbitrary criterion.

Mnemonic

There are several acronyms intended to help memorise the taxonomic hierarchy, such as "King Phillip came over for great spaghetti".[29]

See also

References

Bibliography

Notes and References

  1. Web site: International Code of Nomenclature for algae, fungi, and plants – Melbourne Code . Articles 2 and 3 . 2012 . IAPT-Taxon.org . 28 April 2013 . 10 June 2019 . https://web.archive.org/web/20190610042454/https://www.iapt-taxon.org/nomen/main.php?page=art2 . live .
  2. Moore . R. T. . Proposal for the recognition of super ranks . Taxon . 1974 . 23 . 4 . 650–652 . 10.2307/1218807 . 1218807 . 5 October 2016 . 6 October 2016 . https://web.archive.org/web/20161006082804/http://www.iapt-taxon.org/historic/Congress/IBC_1975/Prop034bis-037.pdf . live .
  3. Luketa . S. . New views on the megaclassification of life . Protistology . 2012 . 7 . 4 . 218–237 . dead . https://web.archive.org/web/20150402150257/http://protistology.ifmo.ru/num7_4/luketa_protistology_7-4.pdf . 2 April 2015.
  4. Book: International Commission on Zoological Nomenclature . 1999 . International Code of Zoological Nomenclature . London . The International Trust for Zoological Nomenclature . 0-85301-006-4 . Glossary . 10 November 2023 . 3 September 2021 . https://web.archive.org/web/20210903062842/https://www.iczn.org/the-code/the-code-online/ . live .
  5. Web site: jibran . jibran . Log In ‹ Information metBotanical Ranks: Understanding Taxonomic Classification" Meta Description: Explore the hierarchical structure of botanical classification, from Kingdom to Species, essential for understanding plant diversity and evolution. a description — WordPress . 2024-05-07 . dev-information-meta-descrition.pantheonsite.io.
  6. Web site: 2012 . International Code of Nomenclature for algae, fungi, and plants – Melbourne Code . live . https://web.archive.org/web/20201010230658/https://www.iapt-taxon.org/nomen/main.php?page=art3 . 10 October 2020 . 28 April 2013 . IAPT-Taxon.org.
  7. Web site: International Code of Nomenclature for algae, fungi, and plants – Melbourne Code . Articles 4.2 and 24.1 . 2012 . IAPT-Taxon.org . 3 August 2018 . 3 August 2018 . https://web.archive.org/web/20180803133717/https://www.iapt-taxon.org/nomen/main.php?page=art4 . live .
  8. Web site: International Code of Nomenclature for algae, fungi, and plants – Melbourne Code . Article 3.2, and Appendix 1, Articles H.1–3 . 2012 . IAPT-Taxon.org . 28 April 2013 . 10 October 2020 . https://web.archive.org/web/20201010230658/https://www.iapt-taxon.org/nomen/main.php?page=art3 . live .
  9. Göker . Markus . Oren . Aharon . Valid publication of names of two domains and seven kingdoms of prokaryotes . International Journal of Systematic and Evolutionary Microbiology . 22 January 2024 . 74 . 1 . 10.1099/ijsem.0.006242 . 38252124 . 7 June 2024 . Society for General Microbiology . 1466-5034.
  10. Oren. Aharon . Jacques Euzéby . International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision) . . 73 . 5a . 2023. 10.1099/ijsem.0.005585 . free . 37219928. 10261/338243 . free .
  11. Web site: ICTV Code. Section 3.IV, § 3.23; section 3.V, §§ 3.27-3.28... October 2018. 28 November 2018. International Committee on Taxonomy of Viruses. 6 July 2022. https://web.archive.org/web/20220706121843/https://ictv.global/about/code. live.
  12. Oren . Aharon . Emendation of Principle 8, Rules 5b, 8, 15, 33a, and Appendix 7 of the International Code of Nomenclature of Prokaryotes to include the categories of kingdom and domain . International Journal of Systematic and Evolutionary Microbiology . 1 November 2023 . 73 . 11 . 10.1099/ijsem.0.006123 . 37909283.
  13. Whitman . William B. . Oren . Aharon . Chuvochina . Maria . da Costa . Milton S. . Garrity . George M. . Rainey . Fred A. . Rossello-Mora . Ramon . Schink . Bernhard . Sutcliffe . Iain . Trujillo . Martha E. . Ventura . StefanoYR 2018 . Proposal of the suffix –ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes' . International Journal of Systematic and Evolutionary Microbiology . 2018 . 68 . 3 . 967–969 . 10.1099/ijsem.0.002593 . 1466-5034. free . 29458499 .
  14. Web site: International Code of Nomenclature for algae, fungi, and plants (Shenzhen Code) . Article 16 . 2018 . IAPT-Taxon.org . 19 December 2018 . 19 December 2018 . https://web.archive.org/web/20181219230353/https://www.iapt-taxon.org/nomen/pages/main/art_16.html . live .
  15. For example, the chelonian infrafamilies Chelodd (Gaffney & Meylan 1988: 169) and Baenodd (ibid., 176).
  16. ICZN article 29.2
  17. Pearse, A.S. (1936) Zoological names. A list of phyla, classes, and orders, prepared for section F, American Association for the Advancement of Science. American Association for the Advancement of Science, p. 4
  18. As supplied by Gaffney & Meylan (1988).
  19. For the general usage of zoological ranks between the phylum and family levels, including many intercalary ranks, see Carroll (1988). For additional intercalary ranks in zoology, see especially Gaffney & Meylan (1988); McKenna & Bell (1997); Milner (1988); Novacek (1986, cit. in Carroll 1988: 499, 629); and Paul Sereno's 1986 classification of ornithischian dinosaurs as reported in Lambert (1990: 149, 159). For botanical ranks, including many intercalary ranks, see Willis & McElwain (2002).
  20. These are movable ranks, most often inserted between the class and the legion or cohort. Nevertheless, their positioning in the zoological hierarchy may be subject to wide variation. For examples, see the Benton classification of vertebrates (2005).
  21. In zoological classification, the cohort and its associated group of ranks are inserted between the class group and the ordinal group. The cohort has also been used between infraorder and family in saurischian dinosaurs (Benton 2005). In botanical classification, the cohort group has sometimes been inserted between the division (phylum) group and the class group: see Willis & McElwain (2002: 100–101), or has sometimes been used at the rank of order, and is now considered to be an obsolete name for order: See International Code of Nomenclature for algae, fungi, and plants, Melbourne Code 2012, Article 17.2.
  22. The supra-ordinal sequence gigaorder–megaorder–capaxorder–hyperorder (and the microorder, in roughly the position most often assigned to the parvorder) has been employed in turtles at least (Gaffney & Meylan 1988), while the parallel sequence magnorder–grandorder–mirorder figures in recently influential classifications of mammals. It is unclear from the sources how these two sequences are to be coordinated (or interwoven) within a unitary zoological hierarchy of ranks. Previously, Novacek (1986) and McKenna-Bell (1997) had inserted mirorders and grandorders between the order and superorder, but Benton (2005) now positions both of these ranks above the superorder.
  23. Additionally, the terms biovar, morphovar, phagovar, and serovar designate bacterial strains (genetic variants) that are physiologically or biochemically distinctive. These are not taxonomic ranks, but are groupings of various sorts which may define a bacterial subspecies.
  24. Gingerich . P. D. . 10.1139/z87-169 . Evolution and the fossil record: Patterns, rates, and processes . Canadian Journal of Zoology . 65 . 5 . 1053–1060 . 1987.
  25. Kluge. N.J.. 1999. A system of alternative nomenclatures of supra-species taxa. Linnaean and post-Linnaean principles of systematics. Entomological Review. 79. 2. 133–147.
  26. Kluge . N.J. . Circumscriptional names of higher taxa in Hexapoda . Bionomina . 2010 . 1 . 1 . 15–55 . 10.11646/bionomina.1.1.3. free.
  27. Stuessy, T.F. (2009). Plant Taxonomy: The Systematic Evaluation of Comparative Data. 2nd ed. Columbia University Press, p. 175.
  28. Brusca, R.C. & Brusca, G.J. (2003). Invertebrates. 2nd ed. Sunderland, Massachusetts: Sinauer Associates, pp. 26–27.
  29. Book: Evans, Rod L.. 2007. Every Good Boy Deserves Fudge: The Book of Mnemonic Devices. Penguin. 978-1-4406-2207-6. 23 November 2023. 23 November 2023. https://web.archive.org/web/20231123013844/https://books.google.com/books?id=_u10WSXeK4kC&dq=%22king+phillip+came+over+for+good+spaghetti%22&pg=PT26. live.