Mir-34 microRNA precursor family explained

mir-34 microRNA precursor family
Symbol:mir-34
Rfam:RF00456
Mirbase:MI0000268
Mirbase Family:MIPF0000039
Rna Type:Gene
miRNA
Tax Domain:Eukaryota

The miR-34 microRNA precursor family are non-coding RNA molecules that, in mammals, give rise to three major mature miRNAs. The miR-34 family members were discovered computationally[1] and later verified experimentally.[2] [3] The precursor miRNA stem-loop is processed in the cytoplasm of the cell, with the predominant miR-34 mature sequence excised from the 5' arm of the hairpin.[4]

The miR-34 family

In mammals, three miR-34 precursors are produced from two transcriptional units.[5] The human miR-34a precursor is transcribed from chromosome 1. The miR-34b and miR-34c precursors are co-transcribed from a region on chromosome 11, apparently as part of a transcript known as BC021736.

Expression of MIR34A (gene) in mouse is observed in all tissues examined but is highest in brain. miR-34b and -c are relatively less abundant in most tissues, but are the predominant miR-34 species in lung.[5] The presence of miR-34 products has also been confirmed in embryonic stem cells. miR-34 has been shown to be maternally inherited in Drosophila and zebrafish and the loss of miR-34 resulted in defects in hindbrain development in zebrafish embryos. This was the first report of knockdown phenotype of miR-34 in any model organism although the phenotype was observed in only about 30% of zebrafish embryos.[6]

Targets of miR-34

Yamakuchi et al.. showed that miR-34a targets the silent information regulator 1 (SIRT1) gene:[7]

"miR-34 inhibition of SIRT1 leads to an increase in acetylated p53 and expression of p21 and PUMA, transcriptional targets of p53 that regulate the cell cycle and apoptosis, respectively. Furthermore, miR-34 suppression of SIRT1 ultimately leads to apoptosis in WT human colon cancer cells but not in human colon cancer cells lacking p53. Finally, miR-34a itself is a transcriptional target of p53, suggesting a positive feedback loop between p53 and miR-34a. Thus, miR-34a functions as a tumor suppressor, in part, through a SIRT1-p53 pathway."[7]

Recently Quantitative proteomicsSILAC approach was used to identify miR-34a targets at genome level in HEK293T cells.[8]

Mir-34 inhibits human p53-mutant gastric cancer tumorspheres

p53-deficient human gastric cancer cells, restoration of functional miR-34 inhibits cell growth and induces chemosensitization and apoptosis, indicating that miR-34 may restore p53 function. Restoration of miR-34 inhibits tumorsphere formation and growth, which is reported to be correlated to the self-renewal of cancer stem cells. The mechanism of miR-34-mediated suppression of self-renewal appears to be related to the direct modulation of downstream targets Bcl-2, Notch, and HMGA2, indicating that miR-34 may be involved in gastric cancer stem cell self-renewal/differentiation decision-making.[9] [10] miR-34c has also been associated to bone development and bone cancer.[11]

External links

Notes and References

  1. Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP . Vertebrate microRNA genes . Science . 299 . 5612 . 1540 . Mar 2003 . 12624257 . 10.1126/science.1080372 . 37750545 .
  2. Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G . Numerous microRNPs in neuronal cells containing novel microRNAs . RNA . 9 . 2 . 180–6 . Feb 2003 . 12554860 . 1370383 . 10.1261/rna.2141503 .
  3. Houbaviy HB, Murray MF, Sharp PA . Embryonic stem cell-specific MicroRNAs . Developmental Cell . 5 . 2 . 351–8 . Aug 2003 . 12919684 . 10.1016/S1534-5807(03)00227-2 . free .
  4. He L, He X, Lim LP, de Stanchina E, Xuan Z, Liang Y, Xue W, Zender L, Magnus J, Ridzon D, Jackson AL, Linsley PS, Chen C, Lowe SW, Cleary MA, Hannon GJ . A microRNA component of the p53 tumour suppressor network . Nature . 447 . 7148 . 1130–4 . Jun 2007 . 17554337 . 10.1038/nature05939 . 4590999 .
  5. Hermeking H . The miR-34 family in cancer and apoptosis . Cell Death and Differentiation . 17 . 2 . 193–9 . Feb 2010 . 19461653 . 10.1038/cdd.2009.56 . 25936686 .
  6. Soni K, Choudhary A, Patowary A, Singh AR, Bhatia S, Sivasubbu S, Chandrasekaran S, Pillai B . miR-34 is maternally inherited in Drosophila melanogaster and Danio rerio . Nucleic Acids Research . 41 . 8 . 4470–80 . Apr 2013 . 23470996 . 10.1093/nar/gkt139 . 3632126.
  7. Yamakuchi M, Ferlito M, Lowenstein CJ . miR-34a repression of SIRT1 regulates apoptosis . Proceedings of the National Academy of Sciences of the United States of America . 105 . 36 . 13421–6 . Sep 2008 . 18755897 . 2533205 . 10.1073/pnas.0801613105 . free .
  8. Bargaje R, Gupta S, Sarkeshik A, Park R, Xu T, Sarkar M, Halimani M, Roy SS, Yates J, Pillai B . Identification of novel targets for miR-29a using miRNA proteomics . PLOS ONE . 7 . 8 . e43243 . 2012 . 22952654 . 10.1371/journal.pone.0043243 . 3428309. free .
  9. Ji Q, Hao X, Meng Y, Zhang M, Desano J, Fan D et al . 2008 . Restoration of tumor suppressor miR-34 inhibits human p53-mutant gastric cancer tumorspheres . BMC Cancer . 8 . 266 . 10.1186/1471-2407-8-266 . 18803879 . 2564978 . free .
  10. http://www.pathologie.med.uni-muenchen.de/020wissenschaft/009ag_hermeking/fig1.jpg Mir-34 and p53 pathway
  11. Bae Y, Yang T, Zeng HC, Campeau PM, Chen Y, Bertin T, Dawson BC, Munivez E, Tao J, Lee BH . miRNA-34c regulates Notch signaling during bone development . Human Molecular Genetics . 21 . 13 . 2991–3000 . Jul 2012 . 22498974 . 10.1093/hmg/dds129 . 3373245.