Haloferax Explained

Haloferax (common abbreviation: Hfx.) is a genus of halobacteria in the order Haloferacaceae.

Genetic exchange

Cells of H. mediterranei and cells of the related species H. volcanii can undergo a process of genetic exchange between two cells which involves cell fusion resulting in a heterodiploid cell (containing two different chromosomes in one cell).^[1] Although this genetic exchange ordinarily occurs between two cells of the same species, it can also occur at a lower frequency between an H. mediterranei and an H. volcani cell. These two species have an average nucleotide sequence identity of 86.6%. During this exchange process, a diploid cell is formed that contains the full genetic repertoire of both parental cells, and genetic recombination is facilitated. Subsequently, the cells separate, giving rise to recombinant cells.

Taxonomy

As of 2022, 13 species are validly published under the genus Haloferax.

Proposed speciesSeveral species and novel binomial names have been proposed, but not validly published.

• "Haloferax antrum" Enache et al. 2006, "Haloferax opilio" Enache et al. 2006, "Haloferax rutilus" Enache et al. 2006 and "Haloferax viridis" Enache et al. 2006 were isolated from Romanian salt lakes and first proposed as new species in 2006. Only H. prahovense, that was proposed along them has since been validly published.
• "Haloferax berberensis" Kharroub et al. 2005e was isolated in Algeria and proposed as new species in 2005.
• Haloferax litoreum, Haloferax marinisediminis and Haloferax marinum were first published in 2021, but are not accepted as of 2022.^[2]
• Haloferax marisrubri and Haloferax profundi were first published in 2020, but is not accepted as of 2022.^[3]
• Haloferax massilisiensis or Haloferax massiliense was first published in 2016 and again in 2018 as human associated halophilic archaeon. As of 2022, this species is not accepted.^[4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[5] and National Center for Biotechnology Information (NCBI).^[6]

See also

• Archaea
• List of Archaea genera
• Homologous recombination
• Extremophile

Further reading

• Oren A, Ventosa A . 2000 . International Committee on Systematic Bacteriology Subcommittee on the taxonomy of Halobacteriaceae. Minutes of the meetings, 16 August 1999, Sydney, Australia . Int. J. Syst. Evol. Microbiol. . 50 . 3 . 1405 - 1407 . 10843089 . 10.1099/00207713-50-3-1405. free .
• Torreblanca M, Rodriquez-Valera F, Juez G, Ventosa A, Kamekura M, Kates M . 1986 . Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition, and description of Haloarcula gen. nov. and Haloferax gen.nov . Syst. Appl. Microbiol. . 8 . 1–2 . 89 - 99 . 10.1016/s0723-2020(86)80155-2.
• Book: Gibbons, NE . 1974 . Family V. Halobacteriaceae fam. nov. . Bergey's Manual of Determinative Bacteriology . 8th . RE Buchanan . NE Gibbons . The Williams & Wilkins Co. . Baltimore . 0-683-01117-0 . registration .

External links

• Haloferax at BacDive - the Bacterial Diversity Metadatabase
• NCBI Taxonomy browser

Notes and References

1. Naor A, Lapierre P, Mevarech M, Papke RT, Gophna U . Low species barriers in halophilic archaea and the formation of recombinant hybrids . Curr. Biol. . 22 . 15 . 1444–8 . August 2012 . 22748314 . 10.1016/j.cub.2012.05.056 . free .
2. Web site: LPSN - List of Prokaryotic names with Standing in Nomenclature . . 2022-07-14.
3. Web site: LPSN - List of Prokaryotic names with Standing in Nomenclature . . 2022-07-14.
4. Web site: LPSN - List of Prokaryotic names with Standing in Nomenclature . . 2022-07-14.
5. Web site: J.P. Euzéby . Haloferax . 2023-10-10 . List of Prokaryotic names with Standing in Nomenclature (LPSN).
6. Web site: Sayers . et al.. Haloferax . 2023-10-10 . National Center for Biotechnology Information (NCBI) taxonomy database.
7. Web site: The LTP . 10 May 2023.
8. Web site: LTP_all tree in newick format. 10 May 2023.
9. Web site: LTP_06_2022 Release Notes. 10 May 2023.
10. Web site: GTDB release 08-RS214 . Genome Taxonomy Database. 10 May 2023.
11. Web site: ar53_r214.sp_label . Genome Taxonomy Database. 10 May 2023.
12. Web site: Taxon History . Genome Taxonomy Database. 10 May 2023.