Transcription factor II H explained

general transcription factor IIH, polypeptide 1, 62kDa
Hgncid:4655
Symbol:GTF2H1
Altsymbols:BTF2
Entrezgene:2965
Omim:189972
Refseq:NM_005316
Uniprot:P32780
Chromosome:11
Arm:p
Band:15.1
Locussupplementarydata:-p14
general transcription factor IIH, polypeptide 2, 44kDa
Hgncid:4656
Symbol:GTF2H2
Altsymbols:BTF2, TFIIH, BTF2P44, T-BTF2P44
Entrezgene:2966
Omim:601748
Refseq:NM_001515
Uniprot:Q13888
Chromosome:5
Arm:q
Band:12.2
Locussupplementarydata:-13.3
general transcription factor IIH, polypeptide 3, 34kDa
Hgncid:4657
Symbol:GTF2H3
Altsymbols:BTF2, TFIIH
Entrezgene:2967
Omim:601750
Refseq:NM_001516
Uniprot:Q13889
Chromosome:12
Arm:q
Band:24.31

Transcription factor II H (TFIIH) is an important protein complex, having roles in transcription of various protein-coding genes and DNA nucleotide excision repair (NER) pathways. TFIIH first came to light in 1989 when general transcription factor-δ or basic transcription factor 2 was characterized as an indispensable transcription factor in vitro. This factor was also isolated from yeast and finally named TFIIH in 1992.[1] [2]

TFIIH consists of ten subunits, 7 of which (ERCC2/XPD, ERCC3/XPB, GTF2H1/p62, GTF2H4/p52, GTF2H2/p44, GTF2H3/p34 and GTF2H5/TTDA) form the core complex. The cyclin-activating kinase-subcomplex (CDK7, MAT1, and cyclin H) is linked to the core via the XPD protein.[3] Two of the subunits, ERCC2/XPD and ERCC3/XPB, have helicase and ATPase activities and help create the transcription bubble. In a test tube, these subunits are only required for transcription if the DNA template is not already denatured or if it is supercoiled.

Two other TFIIH subunits, CDK7 and cyclin H, phosphorylate serine amino acids on the RNA polymerase II C-terminal domain and possibly other proteins involved in the cell cycle. Next to a vital function in transcription initiation, TFIIH is also involved in nucleotide excision repair.

History of TFIIH

Before TFIIH identified it, it had several names. It was isolated in 1989 isolated from rat liver, known by factor transcription delta. When identified from cancer cells it was known that time as Basic transcription factor 2. Also, when isolated from yeast it was termed transcription factor B. Finally, in 1992 known as TFIIH.[4]

Structure of TFIIH

TFIIH is a ten‐subunit complex; seven of these subunits comprise the “core” whereas three comprise the dissociable “CAK” (CDK Activating Kinase) module.[5] The core consists of subunits XPB, XPD, p62, p52, p44, p34 and p8 while CAK is composed of CDK7, cyclin H, and MAT1.[6]

Functions

General function of TFIIH:

  1. Initiation transcription of protein- coding gene.[7]
  2. DNA nucleotide repairing.

(NER)TFIIH is a general transcription factor that acts to recruit RNA Pol II to the promoters of genes.  It functions as a helicase that unwinds DNA.  It also unwinds DNA after a DNA lesion has been recognized by either the global genome repair (GGR) pathway or the transcription-coupled repair (TCR) pathway of NER.[8] [9] Purified TFIIH has role in stopping further RNA synthesis by activating the cyclic peptide α-amanitin.

Trichothiodystrophy

Mutation in genes (XPB), (XPD) or (TTDA) cause trichothiodystrophy, a condition characterized by photosensitivity, ichthyosis, brittle hair and nails, intellectual impairment, decreased fertility and/or short stature.[10]

Disease

Genetic polymorphisms of genes that encode subunits of TFIIH are known to be associated with increased cancer susceptibility in many tissues, e.g.; skin tissue, breast tissue and lung tissue. Mutations in the subunits (such as XPD and XPB) can lead to a variety of diseases, including xeroderma pigmentosum (XP) or XP combined with Cockayne syndrome.[11] In addition to genetic variations, virus-encoded proteins also target TFIIH.[12]

DNA repair

TFIIH participates in nucleotide excision repair (NER) by opening the DNA double helix after damage is initially recognized. NER is a multi-step pathway that removes a wide range of different damages that distort normal base pairing, including bulky chemical damages and UV-induced damages. Individuals with mutational defects in genes specifying protein components that catalyze the NER pathway, including the TFIIH components, often display features of premature aging[13] (see DNA damage theory of aging).

Inhibitors

Potent, bioactive natural products like triptolide that inhibit mammalian transcription via inhibition of the XPB subunit of the general transcription factor TFIIH has been recently reported as a glucose conjugate for targeting hypoxic cancer cells with increased glucose transporter expression.[14]

Notes and References

  1. Flores O, Lu H, Reinberg D . Factors involved in specific transcription by mammalian RNA polymerase II. Identification and characterization of factor IIH . The Journal of Biological Chemistry . 267 . 4 . 2786–93 . February 1992 . 10.1016/S0021-9258(18)45947-9 . 1733973 . free .
  2. Kim TK, Ebright RH, Reinberg D . Mechanism of ATP-dependent promoter melting by transcription factor IIH . Science . 288 . 5470 . 1418–22 . May 2000 . 10827951 . 10.1126/science.288.5470.1418 . Richard H. Ebright . 2000Sci...288.1418K .
  3. Lee TI, Young RA . Transcription of eukaryotic protein-coding genes . Annual Review of Genetics . 34 . 77–137 . 2000 . 11092823 . 10.1146/annurev.genet.34.1.77 .
  4. Rimel JK, Taatjes DJ . The essential and multifunctional TFIIH complex . Protein Science . 27 . 6 . 1018–1037 . June 2018 . 29664212 . 10.1002/pro.3424 . 5980561 .
  5. Drapkin R, Reardon JT, Ansari A, Huang JC, Zawel L, Ahn K, Sancar A, Reinberg D . Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II . Nature . 368 . 6473 . 769–72 . April 1994 . 8152490 . 10.1038/368769a0 . 1994Natur.368..769D . 4363484 .
  6. Drapkin R, Reardon JT, Ansari A, Huang JC, Zawel L, Ahn K, Sancar A, Reinberg D . Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II . Nature . 368 . 6473 . 769–72 . April 1994 . 8152490 . 10.1038/368769a0 . 1994Natur.368..769D . 4363484 .
  7. Compe E, Egly JM . TFIIH: when transcription met DNA repair . Nature Reviews. Molecular Cell Biology . 13 . 6 . 343–54 . May 2012 . 22572993 . 10.1038/nrm3350 . 29077515 . free .
  8. Hoogstraten D, Nigg AL, Heath H, Mullenders LH, van Driel R, Hoeijmakers JH, Vermeulen W, Houtsmuller AB . Rapid switching of TFIIH between RNA polymerase I and II transcription and DNA repair in vivo . Molecular Cell . 10 . 5 . 1163–74 . November 2002 . 12453423 . 10.1016/s1097-2765(02)00709-8 . free .
  9. Assfalg R, Lebedev A, Gonzalez OG, Schelling A, Koch S, Iben S . TFIIH is an elongation factor of RNA polymerase I . Nucleic Acids Research . 40 . 2 . 650–9 . January 2012 . 21965540 . 10.1093/nar/gkr746 . 3258137 .
  10. Theil AF, Hoeijmakers JH, Vermeulen W . TTDA: big impact of a small protein . Experimental Cell Research . 329 . 1 . 61–8 . November 2014 . 25016283 . 10.1016/j.yexcr.2014.07.008 .
  11. Oh KS, Khan SG, Jaspers NG, Raams A, Ueda T, Lehmann A, Friedmann PS, Emmert S, Gratchev A, Lachlan K, Lucassan A, Baker CC, Kraemer KH . Phenotypic heterogeneity in the XPB DNA helicase gene (ERCC3): xeroderma pigmentosum without and with Cockayne syndrome . Human Mutation . 27 . 11 . 1092–103 . November 2006 . 16947863 . 10.1002/humu.20392 . 22852219 . free .
  12. Le May N, Dubaele S, Proietti De Santis L, Billecocq A, Bouloy M, Egly JM . TFIIH transcription factor, a target for the Rift Valley hemorrhagic fever virus . Cell . 116 . 4 . 541–50 . February 2004 . 14980221 . 10.1016/s0092-8674(04)00132-1 . 14312462 . free .
  13. Edifizi D, Schumacher B . Genome Instability in Development and Aging: Insights from Nucleotide Excision Repair in Humans, Mice, and Worms . Biomolecules . 5 . 3 . 1855–69 . August 2015 . 26287260 . 4598778 . 10.3390/biom5031855 . free .
  14. iScience . A Glucose-Triptolide Conjugate Selectively Targets Cancer Cells under Hypoxia . 23 . 9 . 2020 . Datan E, Minn I, Peng X, He QL, Ahn H, Yu B, Pomper MG, Liu JO . 101536 . 33083765 . 10.1016/j.isci.2020.101536. 7509213 . 2020iSci...23j1536D . free .