Thomas Dufter (born 20 December 1966 in Inzell) is a former German nordic combined skier who competed during the late 1980s and early 1990s. He won a bronze medal in the 3 x 10 km team event at the 1993 FIS Nordic World Ski Championships in Falun.
Dufter's lone individual victory was in a World Cup event at Planica, Yugoslavia in 1990.