StarBase (biological database) explained

StarBase
Description:microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Center:Sun Yat-sen University
Laboratory:Key Laboratory of Gene Engineering of the Ministry of Education
Author:Jian-Hua Yang
Citation:Yang & al. (2011)
Released:2010
Url:http://starbase.sysu.edu.cn/

StarBase[1] is a database for decoding miRNA-mRNA, miRNA-lncRNA,[2] miRNA-sncRNA, miRNA-circRNA,[2] miRNA-pseudogene, protein-lncRNA,[3] protein-ncRNA, protein-mRNA interactions, and ceRNA networks[4] from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data.[5] [6] StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA[7] regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from The Cancer Genome Atlas (TCGA) Data Portal.

See also

References

  1. Web site: starBase or ENCORI: Decoding the Encyclopedia of RNA Interactomes. rnasysu.com.
  2. Web site: LncRNABase miRNA-lncRNA interactions: decoding miRNA-lncRNA interaction maps . starbase.sysu.edu.cn . dead . https://web.archive.org/web/20130922102316/http://starbase.sysu.edu.cn/mirLncRNA.php . 2013-09-22.
  3. Web site: RBP-LncRNA interactions, starBase: decoding RNA-LncRNA interaction maps . starbase.sysu.edu.cn . dead . https://web.archive.org/web/20130922150259/http://starbase.sysu.edu.cn/rbpLncRNA.php . 2013-09-22.
  4. Web site: CeRNABase starBase: Decoding ceRNA regulatory networks from CLIP-Seq (PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data. Competing endogenous RNAs (CeRNAs) . 2013-12-08 . 2013-09-22 . https://web.archive.org/web/20130922123437/http://starbase.sysu.edu.cn/mrnaCeRNA.php . dead .
  5. Yang. Jian-Hua. Li Jun-Hao . Shao Peng . Zhou Hui . Chen Yue-Qin . Qu Liang-Hu . Jan 2011. starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. Nucleic Acids Res.. 39. Database issue. D202-9. England. 21037263. 10.1093/nar/gkq1056. 3013664 .
  6. Li. JH. Liu, S . Zhou, H . Qu, LH . Yang, JH . starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.. Nucleic Acids Research. Dec 1, 2013. 24297251. 10.1093/nar/gkt1248. 42. 1. D92-7 . 3964941.
  7. Web site: Pan-Cancer ceRNA Regulatory Network. StarBase: Decoding miRNA-target, miRNA-ceRNA and protein-RNA interaction maps from CLIP-Seq(PAR-CLIP, HITS-CLIP, iCLIP, CLASH) data . starbase.sysu.edu.cn . 13 January 2022 . https://web.archive.org/web/20140315231953/http://starbase.sysu.edu.cn/ceRNAFunction.php . 15 March 2014 . dead.

External links

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