Sphingomyelin synthase explained

sphingomyelin synthase
Ec Number:2.7.8.27
Go Code:0033188
SMSr-ceramide

In enzymology, a sphingomyelin synthase is an enzyme that catalyzes the chemical reaction

a ceramide + a phosphatidylcholine

\rightleftharpoons

a sphingomyelin + a 1,2-diacyl-sn-glycerol

or the reaction using phosphatidylethanolamine instead of phosphatidylcholine to generate ceramide phosphoethanolamine (CPE), a sphingomyelin analog rich in invertebrates, such as insects.

Thus, the two substrates of this enzyme are ceramide and phosphatidylcholine, whereas its two products are sphingomyelin and 1,2-diacyl-sn-glycerol.

This enzyme belongs to the family of transferases, specifically those transferring non-standard substituted phosphate groups. The systematic name of this enzyme class is ceramide:phosphatidylcholine cholinephosphotransferase. Other names in common use include SM synthase, SMS1, and SMS2. SM synthase family also includes the enzyme catalyzing CPE synthesis, named SMSr (SMS-related).

Structure of SM synthases

The high sequence identities shared among the three members of the Sphingomyelin Synthase (SMS) family have intrigued researchers for years. Recent cryo-electron microscopic studies have unveiled a fascinating hexameric organization specifically for SMSr,[1] while biochemical investigations have highlighted the formation of stable dimers by SMS1 and SMS2.[2] Within this hexameric structure, each monomeric unit of SMSr functions as an independent catalytic entity, characterized by six transmembrane helices.

The structural analysis has revealed the presence of a sizable chamber within the helical bundle of SMSr. This chamber serves as the site for catalytic activity, with researchers pinpointing a catalytic pentad, denoted as E-H/D-H-D, strategically positioned at the interface between the lipophilic and hydrophilic segments of the reaction chamber. Furthermore, the elucidation of SMSr's catalytic mechanism has uncovered an intricate two-step synthesis process for SM synthesis. Initially, phosphoethanolamine (or phosphatidylcholine in case of SMS1/2) is hydrolyzed from phosphatidylethanolamine (PE-PLC hydrolysis), followed by the subsequent transfer of the phosphoethanolamine moiety to ceramide.

References

Notes and References

  1. Hu . K . Zhang . Q . Chen . Y . Yang . J . Xia . Y . Rao . B . Li . S . Shen . Y . Cao . M . Lu . H . Qin . A . Jiang . XC . Yao . D . Zhao . J . Zhou . Lu . 2024 . Cryo-EM structure of human sphingomyelin synthase and its mechanistic implications for sphingomyelin synthesis . Nat Struct Mol Biol. 1–12 . 10.1038/s41594-024-01237-2 .
  2. Hayashi . Yasuhiro . Nemoto-Sasaki . Yoko . Matsumoto . Naoki . Tanikawa . Takashi . Oka . Saori . Tanaka . Yusuke . Arai . Seisuke . Wada . Ikuo . Sugiura . Takayuki . Yamashita . Atsushi . January 2017 . Carboxyl-terminal Tail-mediated Homodimerizations of Sphingomyelin Synthases Are Responsible for Efficient Export from the Endoplasmic Reticulum . Journal of Biological Chemistry . en . 292 . 3 . 1122–1141 . 10.1074/jbc.M116.746602 . free . 5247646 . 27927984.