Sorting nexin explained

Symbol:BAR3-WASP
WASP-binding domain of Sorting nexin protein
Pfam:PF10456

Sorting nexins are a large group of proteins that are localized in the cytoplasm and have the potential for membrane association either through their lipid-binding PX domain (a phospholipid-binding motif) or through protein–protein interactions with membrane-associated protein complexes[1] [2] Some members of this family have been shown to facilitate protein sorting.

Family members

In humans, sorting nexins are transcribed from the following genes:

GenesDomain Composition
N-terminusMid-1Mid-2Mid-3C-terminus
SNX1, SNX2Sorting_nexin_NPXBAR[3] (Vps5)
SNX4, SNX7, SNX8, SNX30PXBAR (Vsp5)
SNX5, SNX6, SNX32PXBAR
SNX9, SNX18, SNX33SH3PXBAR (BAR_3_WASP_bdg)[4]
SNX13, SNX14, SNX19, SNX25PXA[5] RGSPXNexin_C
SNX15PXMIT[6]
SNX17, SNX31PXRA[7] FERM_M[8]
SNX23kinesin_motorSMAD_FHA[9] PX
SNX26PXSH3RhoGAP
SNX27PDZPX-FERM_M[10]
SNX28PXSH3SH3
PX

Structure

Sorting nexins either consist solely of a PX domain (e.g. SNX3) or have a modular structure made up of the PX and additional domains.

A subgroup of sorting nexins (comprising, in humans, SNX1, SNX2, SNX4, SNX5, SNX6, SNX7, SNX8, SNX9, SNX18, SNX30, SNX32 and SNX33) possess a BAR domain at their C-terminus. (The BAR domain of SNXs 1, 2, 4, 7, 8 and 30 is classified by pfam as 'Vps5 C terminal like'.)

An example of a sorting nexin domain structure can be seen here for SNX1:

  1. NTD – N-terminal domain
  2. PX domain
  3. CTD – C-terminal BAR domain

Notes and References

  1. 10.1038/nrm974 . Dixon JE, Worby CA . Sorting out the cellular functions of sorting nexins . Nat. Rev. Mol. Cell Biol. . 3 . 12 . 919–931 . 2002 . 12461558. 36361630 .
  2. Worby CA, Dixon JE . Sorting out the cellular functions of sorting nexins . Nat. Rev. Mol. Cell Biol. . 3 . 12 . 919–31 . 2002 . 12461558 . 10.1038/nrm974. 36361630 .
  3. Frost A, Unger VM, De Camilli P . The BAR domain superfamily: membrane-molding macromolecules . Cell . 137 . 2 . 191–196 . April 2009 . 19379681 . 10.1016/j.cell.2009.04.010. 4832598 .
  4. BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein,
  5. PXA: PXA domain,
  6. MIT: MIT (microtubule interacting and transport) domain,
  7. RA: Ras association (RalGDS/AF-6) domain,
  8. FERM_M: FERM central domain,
  9. SMAD_FHA: SMAD/FHA domain,
  10. FERM_M: FERM central domain,