Sage Bionetworks Explained

Sage Bionetworks
Type:Non-profit organization
Headquarters:Seattle, WA
Location Country:United States
Leader Title:President and CEO
Leader Name:Luca Foschini
Leader Title2:COO
Leader Name2:Kim Baggett
Leader Title3:Director
Leader Name3:Anna Greenwood
Leader Title4:Vice President
Leader Name4:Christine Suver
Affiliations:Fred Hutchinson Cancer Research Center

Sage Bionetworks is a nonprofit organization in Seattle that promotes open science and patient engagement in the research process. It is led by Luca Foschini.[1] It was co-founded by Stephen Friend and Eric Schadt.[2] [3]

Open science

Sage Bionetworks is notable for being an early advocate of open science.[4] [5] The company operates a software platform for collaborative data analysis called Synapse[6] that allows researchers to work together on data curation and computational modeling asynchronously in a manner inspired by GitHub. Synapse also serves as the software infrastructure for running computational challenges.[7] Sage is also developing a citizen-science platform called Bridge.[8] [9]

Research

The bulk of Sage's scientific results emerge from cancer and neurosciences, with notable contributions to the Cancer Genome Atlas Pan-Cancer project.[10] Another Sage initiative, The Resilience Project[11] describes itself as a search for individuals who have genetic changes expected to cause severe illness but who remain perfectly healthy. The hope is to yield insight into factors that protect these individuals from disease.[12] [13] In 2019 Sage Bionetworks has joined Open-AD Drug Discovery Center, which aims to find new Alzheimer's drugs. “This project stitches together open science approaches in computational and experimental research,” Sage president Dr. Lara Mangravite said in a statement.[14]

History

Sage Bionetworks was founded in 2009 as a spinout of Merck & Co., who released software, hardware, intellectual property, and staff connected to its Rosetta Inpharmatics unit.[15] A donation from Quintiles provided early funding.[16]

In March 2011 Sage partnered with CHDI Foundation to develop computer simulations for studying Huntington's disease. At the same time Sage also announced a partnership with Takeda Pharmaceutical Company wherein Sage would do research to identify biological targets for central nervous system diseases.[17]

In February 2013, Sage Bionetworks partnered with the Dialogue on Reverse Engineering Assessment and Methods (DREAM) project to provide expertise and infrastructure for DREAM Challenges on the Synapse.org platform.[18]

In September 2019, Sage announced a partnership with Cornell Tech, the University of California, San Francisco, Open mHealth and The Commons Project to develop an electronic health data management program called CommonHealth. The program would use Health Level Seven International standards for compatibility with both Apple Health and a similar app on Android devices.[19]

See also

External links

Notes and References

  1. Web site: Leadership – Sage Bionetworks. sagebase.org. en-US. 2023-08-14.
  2. 2012. Profile Stephen Friend: The Visionary. Science. 335. 6069. 651–653. 10.1126/science.335.6069.651. 22323794. Kaiser. Jocelyn.
  3. Web site: Sage Bionetworks Seattle | Directors.
  4. Strauss . S. . Open access consortium . Nature Biotechnology . 29 . 4 . 298 . 2011 . 10.1038/nbt0411-298b. free .
  5. Hunter . J. . Stephens . S. . Is open innovation the way forward for big pharma? . Nature Reviews Drug Discovery . 9 . 2 . 87 . 2010 . 10.1038/nrd3099. 1710643 .
  6. Web site: Sage Synapse . 10 February 2014.
  7. Web site: Sage Bionetworks and the Thriving Ecosystem of Challenge-Based Discovery . 2 June 2014.
  8. Web site: Seattle's Sage Bionetworks seeks a drug-discovery revolution . Maureen . O'Hagan . Seattle Times . 11 February 2012 . 12 February 2012.
  9. Web site: Sage Bionetworks Announces Program to Develop BRIDGE: An IT Platform That Leverages Patient Wisdom and Data for 21st Century Biomedical Research . 27 September 2013.
  10. 10.1038/ng.2764. 24071849. The Cancer Genome Atlas Pan-Cancer analysis project. Nature Genetics. 45. 10. 1113–20. 2013. Chang . K. . Creighton . C. J. . Davis . C. . Donehower . L. . Drummond . J. . Wheeler . D. . Ally . A. . Balasundaram . M. . Birol . I. . Butterfield . Y. S. N. . Chu . A. . Chuah . E. . Chun . H. J. E. . Dhalla . N. . Guin . R. . Hirst . M. . Hirst . C. . Holt . R. A. . Jones . S. J. M. . Lee . D. . Li . H. I. . Marra . M. A. . Mayo . M. . Moore . R. A. . Mungall . A. J. . Robertson . A. G. . Schein . J. E. . Sipahimalani . P. . Tam . A. . Thiessen . N. . 29 . 3919969.
  11. Web site: The Resilence Project.
  12. 10.1126/science.1255648. 24876479. Clues from the resilient. Science. 344. 6187. 970–2. 2014. Friend . S. H.. Schadt . E. E.. 2014Sci...344..970F. free.
  13. Web site: The Search for Genes That Prevent Disease . Aimee . Swartz . The Atlantic . 29 May 2014.
  14. Web site: Seattle nonprofit Sage Bionetworks joins $37M national effort to hunt for Alzheimer's drugs. James Thorne . GeekWire . October 1, 2019.
  15. Web site: Stephen Friend, Leaving High-Powered Merck Gig, Lights Fire for Open Source Biology Movement . Luke . Timmerman . Xconomy . 6 August 2009 . 6 September 2014.
  16. Web site: Sage Bionetworks, Biology's Open Source Spark, Snags "Major" Donation from Quintiles | Xconomy . Luke . Timmerman . Xconomy . 5 October 2009 . 16 January 2012.
  17. Web site: Sage Bionetworks Launches International Neurobiology Partnerships . Business Wire . 30 March 2011.
  18. Web site: Sage Bionetworks Absorbs Dream, Plans Open Science 'Challenges' . Luke . Timmerman . Xconomy . 19 February 2013 . 6 September 2014.
  19. Web site: 2019-09-06 . CommonHealth Will Enable Android™ Phone Users to Access and Share their Electronic Health Record Data with Trusted Apps and Partners . live . https://web.archive.org/web/20231015003159/https://ctsi.ucsf.edu/news/commonhealth-will-enable-android%E2%84%A2-phone-users-access-and-share-their-electronic-health-record . 2023-10-15 . 2023-10-15 . Clinical & Translational Science Institute . en.