Protein-arginine deiminase explained

protein-arginine deiminase
Ec Number:3.5.3.15
Cas Number:75536-80-0
Go Code:0004668
Width:270

In enzymology, a protein-arginine deiminase is an enzyme that catalyzes a form of post translational modification called arginine de-imination or citrullination:

protein L-arginine + H2O

\rightleftharpoons

protein L-citrulline + NH3

Thus, the two substrates of this enzyme are protein L-arginine (arginine residue inside a protein) and H2O, whereas its two products are protein L-citrulline and NH3:

This enzyme belongs to the family of hydrolases, those acting on carbon-nitrogen bonds other than peptide bonds, specifically in linear amidines. The systematic name of this enzyme class is protein-L-arginine iminohydrolase. This enzyme is also called peptidylarginine deiminase.

Structural studies

As of late 2007, seven structures have been solved for this class of enzymes, with PDB accession codes,,,,,, and .

Mammalian proteins

Mammals have 5 protein-arginine deiminases, with symbols

except for rodents, there the letter case is different:

The different case is just a historical artifact. It doesn't indicate that the rodent proteins are special.

References

Notes and References

  1. Sams . K.L . Mukai . C . Marks . B.A . Mittal . C . Demeter . E.A . Nelissen . S . Grenier . J.K . Tate . A.E . Ahmed . F . Coonrod . S.A . Delayed puberty, gonadotropin abnormalities and subfertility in male Padi2/Padi4 double knockout mice . Reprod Biol Endocrinol . October 2022 . 20 . 1 . 150 . 10.1186/s12958-022-01018-w . 36224627 . 9555066 . free .
  2. Web site: Search results for "peptidyl arginine deiminase". Vertebrate Gene Nomenclature Committee. 9 February 2022.
  3. Web site: Protein Superfamily Detail: Protein-arginine_deiminase. Mouse Genome Informatics.