Haplogroup P1 (Y-DNA) explained

P1
(also known as P-M45; K2b2a)
Origin-Date:~38,000 BCE
Origin-Place:Central Asia or Siberia [1] [2] [3]
Ancestor:P (P-P295)[4]
Descendants:Q (Q-M242) and
R (R-M207).
Mutations:M45/PF5962

Haplogroup P1, also known as P-M45 and K2b2a, is a Y-chromosome DNA haplogroup in human genetics. Defined by the SNPs M45 and PF5962, P1 is a primary branch (subclade) of P (P-P295; K2b2).

The only primary subclades of P1 are Haplogroup Q (Q-M242) and Haplogroup R (R-M207). These haplogroups now comprise most of the male lineages among Native Americans, Europeans, Central Asia and South Asia, among other parts of the world.

P1 (M45) likely originated in Central Asia or Siberia,[2] [1] with basal P1* (P1xQ,R) now most common among individuals in Siberia and Central Asia.[5] [3] [1] [6] [7] A 2018 study found basal P1* in two Siberian individuals dated to the Upper Paleolithic (~31,630 cal BP) from a Yana river archaeological site known as Yana RHS.[8]

Structure

The subclades of Haplogroup P1 with their defining mutation, according to the 2016 ISOGG tree:[6]

Ancient and modern distribution

P1*

The modern populations with high frequencies of P1* (or P1xQ,R) are located in Central Asia and Eastern Siberia:

Modern South Asian populations also feature P1 (M45) at low to moderate frequencies.[9] In South Asia, P-M45 is most frequent among the Muslims of Manipur (Pangal, 33%), but this may be due to a very small sample size (nine individuals).

A levels of 14% P-M45* on the island of Korčula in Dalmatia (modern Croatia) and 6% on the neighbouring island of Hvar, may be linked to immigration during the early medieval period, by Central Asian peoples such as the Avars.[10]

It is possible that many cases of haplogroup P1 reported in Central Asia, South Asia and/or West Asia are members of rare or less-researched subclades of haplogroups R2 and Q, rather than P1* per se.

Population group Language family CitationSample sizePercentageComments
TurkicDarenko 200511335.40P-M45
Lell 20011735P-M45
TurkicDarenko 20059228.3P-M45
TurkicDarenko 20053622.2P-M45
Lell 20012420.8P-M45
Lell 20012718.5P-M45
Lell 20013318.2P-M45
TurkicXue 20067017.1P-M45
Darenko 20056811.8P-M45
TurkicWells 20013010P-M45
TurkicDarenko 2005348.8P-M45
Katoh 2004608.3P-M45
TurkicDarenko 2005537.6P-M45
TurkicWells 2001545.6P-M45
TurkicWells 20013665.5P-M45
AustroasiaticReddy 20093535.40P-M45(xM173)§
Reddy 20096410.90P-M45(xM173)§
Reddy 2009 110.00P-M45(xM173)§
South-East Asia Reddy 20092571.60P-M45(xM173)§
Reddy 2009711.40P-M45(xM173)§
North-east India Reddy 20092263.10P-M45(xM173)§
East Asia Reddy 20092140.00P-M45(xM173)§
various/unknown Reddy 20095418.50P-M45(xM173)§
Southern Talysh (Iran) Nasidze 2009504.00P-M45(xM124,xM173)
Northern Talysh (Azerbaijan) Nasidze 2009405.00P-M45(xM124,xM173)
Nasidze 2009504.00P-M45(xM124,xM173)
Nasidze 2009500.00P-M45(xM124,xM173)
Nasidze 2004804.00P-M45(xM124,xM173)
Nasidze 2004506.00P-M45(xM124,xM173)
Nasidze 2008532.00P-M45(xM124,xM173)
Nasidze 2008472.00P-M45(xM124,xM173)
North Iran Regueiro 2006339.00P-M45(xM124,xM173)
South Iran Regueiro 20061173.00P-M45(xM124,xM173)
South Caucacus Nasidze and Stoneking 2001773.00P-M45(xM124,xM173)
South Caucacus Nasidze and Stoneking 20011002.00P-M45(xM124,xM173)
Sherpas from Nepal Bhandari et al. 2015 582 1.67P1(M45) or P(xQ,R1a1,R1b,R2)
Sherpas from Tibet Bhandari et al. 2015 582 0.64P1(M45) or P(xQ,R1a1,R1b,R2)
Hvar (Dalmatian Islands) 14 Possible link to medieval Avar settlers.
Korčula (Dalmatian Islands) 6 Possible link to medieval Avar settlers.

§ May include members of haplogroup R2.
May include members of haplogroup R1*/R1a*

Population groupNP (xQ,xR)QRPaper
Count%Count%Count%
Gope1616.4Sahoo 2006
Oriya Brahmin2414.2Sahoo 2006
Mahishya17317.6Sahoo 2006
Bhumij15213.3Sahoo 2006
Saora13323.1Sahoo 2006
Nepali7228.6Sahoo 2006
Muslims of Manipur9333.3Sahoo 2006
Himachal Pradesh Rajput1516.7Sahoo 2006
Lambadi18422.2Sahoo 2006
Gujarati Patel9222.2Sahoo 2006
Katkari1915.3Sahoo 2006
Madia Gond1417.1Sahoo 2006
Kamma Chowdary150016.71280Sahoo 2006

Q

Near universal in the Kets (95%) of Siberia. Very common in pre-modern Native American populations, except for the Na-Dene peoples, where it reaches 50-90%.

Also common, at 25-50%, in modern Siberian populations such as the Nivkhs, Selkups, Tuvans, Chukchi, Siberian Eskimos, Northern Altaians, and in 30% of Turkmens.

R

The only discovered case of basal R* (i.e. one that does not belong to R1 or R2) is the Mal'ta Boy.

Subclades of R1b, R1a and R2 are now dominant in various populations from Europe to South Asia.

Sources

External links

Notes and References

  1. Tumonggor, Karafet et al., 2014, "Isolation, contact and social behavior shaped genetic diversity in West Timor", Journal of Human Genetics Vol. 59, No. 9 (September), pp. 494–503.
  2. E. Heyer et al., 2013, "Genetic Diversity of Four Filipino Negrito Populations from Luzon: Comparison of Male and Female Effective Population Sizes and Differential Integration of Immigrants into Aeta and Agta Communities", Human Biology, Vol. 85, Iss. 1, p. 201.
  3. Tatiana M Karafet . 2015 . European Journal of Human Genetics . 23 . 3 . 369–373 . etal. 10.1038/ejhg.2014.106 . 24896152 . 4326703 .
  4. Gregory R Magoon . etal . 2013-11-22 . Generation of high-resolution a priori Y-chromosome phylogenies using "next-generation" sequencing data . 10.1101/000802.
  5. Miroslava Derenko et al 2005, Contrasting patterns of Y-chromosome variation in South Siberian populations from Baikal and Altai-Sayan regions Zgms.cm.umk.pl
  6. Web site: ISOGG . 2016 . Y-DNA Haplogroup P . 2016-12-11. ISOGG .
  7. E. Heyer et al., 2013, "Genetic Diversity of Four Filipino Negrito Populations from Luzon: Comparison of Male and Female Effective Population Sizes and Differential Integration of Immigrants into Aeta and Agta Communities", Human Biology, Vol. 85, Iss. 1, p. 201.
  8. Sikora. Martin. Pitulko. Vladimir. Sousa. Vitor. Allentoft. Morten E.. Vinner. Lasse. Rasmussen. Simon. Margaryan. Ashot. Damgaard. Peter de Barros. Castro. Constanza de la Fuente. 2018-10-22. The population history of northeastern Siberia since the Pleistocene. bioRxiv. en. 448829. 10.1101/448829. free. 1887/3198847. free.
  9. 10.1073/pnas.0507714103 . A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios . 2006 . Sahoo . S. . Proceedings of the National Academy of Sciences . 103 . 4 . 843–8 . 16415161 . 1347984. 2006PNAS..103..843S . free .
  10. Paolo Francalacci & Daria Sanna, "History and geography of human Y-chromosome in Europe: a SNP perspective", Journal of Anthropological Sciences, vol. 86 (2008), pp. 59-89. [Access: Aug 24, 2017].)