Orthologous MAtrix explained
| OMA |
| Description: | orthology inference among 1000 complete genomes. |
| Laboratory: | ETH Zurich |
| Author: | Christophe Dessimoz
Adrian Schneider
Adrian Altenhoff
Gaston H. Gonnet |
| Citation: | Altenhoff et al. |
| Released: | 2004 |
| Download: | http://omabrowser.org/All/download.html |
| Webservice: | wsdl |
| Frequency: | 2 releases per year |
OMA (Orthologous MAtrix) is a database of orthologs extracted from available complete genomes.[1] [2] The orthology predictions of OMA are available in several forms:
- OMA Pairs: for a given gene, a list of predicted orthologs in other species is provided.
- OMA Groups: a set of genes across different species which are all orthologous.
- OMA Hierarchical Groups: the set of all genes that have evolved from a single ancestral gene in a given taxonomic range.
- OMA Genome Pair view: the list of all predicted orthologs between two species.
See also
Notes and References
- Altenhoff. Adrian M. Schneider Adrian . Gonnet Gaston H . Dessimoz Christophe . Jan 2011. OMA 2011: orthology inference among 1000 complete genomes. Nucleic Acids Res.. 39. Database issue. D289-94. England. 21113020. 10.1093/nar/gkq1238. 3013747 .
- Altenhoff. Adrian M. Glover. Natasha M. Train. Clément-Marie. Kaleb. Klara. Warwick Vesztrocy. Alex. Dylus. David. de Farias. Tarcisio M. Zile. Karina. Stevenson. Charles. Long. Jiao. Redestig. Henning. Gonnet. Gaston H. Dessimoz. Christophe. The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces. Nucleic Acids Research. 46. D1. 2018. D477–D485. 0305-1048. 10.1093/nar/gkx1019. 29106550 . 5753216.
