Nitratiruptor Explained

Nitratiruptor sp. (strain SB155-2) is a genus of deep sea gram-negative Campylobacterota isolated from Iheya North Hydrothermal field in Okinawa Trough (Japan).[1] This rod-shaped microorganism (0.5 x 1.5 μm) grows chemolithoautotrophically in a wide variety of electron donors and acceptors (i.e. sulfur, hydrogen, oxygen and nitrate) in absence of light and oxygen. It is also a thermophilic group capable of growing within the range of 37–65 °C with the optimal at 55 °C.

Genetic features

Nitratiruptor sp. genome is composed by a single circular chromosome of 1,877,931 bp with the GC content of 43.8% and 39.7%.[2] Due to the geochemical variability in the deep-sea hydrothermal vents, Nitratiruptor sp. displays a metabolic versatility to adapt to this hostile environments which includes sharp gradients in energy sources, electron acceptors or carbon sources. For instance, due to the metal-rich fluids characterizing this areas, a total of 17 genes related with transports systems and detoxification mechanisms of heavy metals (including As, Cd and Cu) were described. Despite this not being a pathogenic bacterium, it possess some virulence genes (including virulence factor mviN, hemolysin or N-linked glycosylation gene cluster) which provide insights into the origins of virulence in their pathogenic relatives, Helicobacter and Campylobacter species.[3]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[4] and National Center for Biotechnology Information (NCBI)[5]

See also

References

  1. Nakagawa. Satoshi. Takai. Ken. Inagaki. Fumio. Horikoshi. Koki. Sako. Yoshihiko. 2005. Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the ε-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough. International Journal of Systematic and Evolutionary Microbiology. 55. 2. 925–933. 10.1099/ijs.0.63480-0. 15774687.
  2. Web site: PATRIC. www.patricbrc.org. 2019-06-07.
  3. Horikoshi. Koki. Takai. Ken. Reysenbach. Anna-Louise. Shimamura. Shigeru. Takaki. Yoshihiro. Nakagawa. Satoshi. 2007-07-17. Deep-sea vent ε-proteobacterial genomes provide insights into emergence of pathogens. Proceedings of the National Academy of Sciences. en. 104. 29. 12146–12150. 10.1073/pnas.0700687104. 0027-8424. 17615243. 1907315. free.
  4. Web site: A.C. Parte. Nitratiruptor. 2023-09-09. List of Prokaryotic names with Standing in Nomenclature (LPSN). et al..
  5. Web site: Sayers. Nitratiruptor. 2023-09-09. National Center for Biotechnology Information (NCBI) taxonomy database. et al..
  6. Web site: The LTP . 20 November 2023.
  7. Web site: LTP_all tree in newick format. 20 November 2023.
  8. Web site: LTP_08_2023 Release Notes. 20 November 2023.
  9. Web site: GTDB release 08-RS214 . Genome Taxonomy Database. 10 May 2023.
  10. Web site: bac120_r214.sp_label . Genome Taxonomy Database. 10 May 2023.
  11. Web site: Taxon History . Genome Taxonomy Database. 10 May 2023.