NiCoT family explained

Proteins currently known to belong to the Ni2+-Co2+ Transporter (NiCoT) family (TC# 2.A.52) can be found in organisms ranging from Gram-negative and Gram-positive bacteria to archaea and some eukaryotes. Members of this family catalyze uptake of Ni2+ and/or Co2+ in a proton motive force-dependent process.[1]

Structure

These proteins range in size from about 300 to 400 amino acyl residues and possess 6, 7, or 8 transmembrane segments (TMSs), thought to result from an intragenic 4 TMS duplication, followed by a deletion of one or two TMSs in the cases of the 7 or 6 TMS proteins. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm. The Co2+ (Ni2+) transporter of Rhodococcus rhodochrous, NhlF, exhibits eight putative TMSs, and eight apparent TMSs are revealed by hydropathy analyses of multiple alignments of family protein sequences. An HX4DH motif in helix 2 of the HoxN protein has been implicated in Ni2+ binding, and both helix 1 and helix 2, which interact spatially, form the selectivity filter.[2] In the Helicobacter pylori NixA homologue, several conserved motifs have been shown to be important for Ni2+ binding and transport.[3]

At least one crystal structure is known, determined by Yu et al.,[4] available at .

Reaction

The overall reaction catalyzed by the proteins of the NiCoT family is:

[Ni<sup>2+</sup> and/or Co<sup>2+</sup>] (out) → [Ni<sup>2+</sup> and/or Co<sup>2+</sup>] (in).

Proteins

Several characterized proteins belong to the Ni2+-Co2+ Transporter (NiCoT) Family (TC# 2.A.43). A complete list of these proteins along with their transporter classification identification numbers (TCID), domain, kingdom/phylum, and some examples can be found in the Transporter Classification Database.

Further reading

Notes and References

  1. Web site: Saier. Milton. Transporter Classification Database: 2.A.52 The Ni2+-Co2+ Transporter (NiCoT) Family. tcdb.org. 4 January 2016.
  2. Degen. O. Eitinger. T. Substrate specificity of nickel/cobalt permeases: insights from mutants altered in transmembrane domains I and II.. J. Bacteriol.. July 2002. 184. 13. 3569–77. 135128. 12057951. 10.1128/jb.184.13.3569-3577.2002.
  3. Wolfram. L. Bauerfeind. P. Conserved low-affinity nickel-binding amino acids are essential for the function of the nickel permease NixA of Helicobacter pylori . J. Bacteriol.. March 2002. 184. 5. 1438–43. 10.1128/JB.184.5.1438-1443.2002 . 11844775. 134868.
  4. Yu. Y. Zhou. M. Kirsch. F. Xu. C. Zhang. L. Wang. Y. Jiang. Z. Wang. N. Li. J. Eitinger. T. Yang. M. Planar substrate-binding site dictates the specificity of ECF-type nickel/cobalt transporters. Cell Research. December 24, 2013. 24. 3. 267–277. 10.1038/cr.2013.172. 24366337. 3945884.