The following is a list of National Christian College Athletic Association Men's Basketball champions.
| Season | Division I[1] | Division II[2] | Division IIA |
|---|---|---|---|
| 1968 | Lee College (TN) | ||
| 1969 | Azusa Pacific University | ||
| 1970 | Azusa Pacific University | ||
| 1971 | Azusa Pacific University | ||
| 1972 | Azusa Pacific University | ||
| 1973 | Lee College (TN) | ||
| 1974 | Bethany Nazarene College | ||
| 1975 | Olivet Nazarene College | ||
| 1976 | Biola University | Ft. Wayne Bible College | |
| 1977 | Bethany Nazarene College | Western Baptist College | |
| 1978 | Biola University | Baptist Bible College (MO) | |
| 1979 | Tennessee Temple University | Baptist Bible College (PA) | |
| 1980 | Liberty Baptist College | Northwestern College (MN) | |
| 1981 | Tennessee Temple University | Baptist Bible College (MO) | |
| 1982 | Tennessee Temple University | Baptist Bible College (MO) | |
| 1983 | Tennessee Temple University | Baptist Bible College (MO) | |
| 1984 | Biola University | Baptist Bible College (MO) | |
| 1985 | Point Loma Nazarene University | ||
| 1986 | Point Loma Nazarene University | Cincinnati Bible College | |
| 1987 | Point Loma Nazarene University | Cincinnati Bible College | |
| 1988 | Tennessee Temple University | Kentucky Christian College | |
| 1989 | Tennessee Temple University | Kentucky Christian College | |
| 1990 | Christian Heritage College | ||
| 1991 | John Brown University | Kentucky Christian College | |
| 1992 | Bethel College | Baptist Bible College (PA) | |
| 1993 | Bethel College | Northwestern College (MN) | Atlanta Christian College |
| 1994 | Lee College (TN) | Central Bible College | |
| 1995 | Indiana Wesleyan University | Kentucky Christian College | Grace Bible College |
| 1996 | Malone College | Kentucky Christian College | |
| 1997 | Christian Heritage College | Kentucky Christian College | |
| 1998 | Christian Heritage College | Southwestern College (AZ) | |
| 1999 | Oakland City University | Kentucky Christian College | |
| 2000 | Bethel College | Atlanta Christian College | Southwestern College of Christian Ministries |
| 2001 | Gardner–Webb University | Central Bible College | Southwestern College of Christian Ministries |
| 2002 | Mount Vernon Nazarene University | Central Bible College | Hillsdale Free Will Baptist College |
| 2003 | Tennessee Temple University | Mid-America Bible College | Southwestern Christian University |
| 2004 | Christian Heritage College | Mid-America Christian University | |
| 2005 | Spring Arbor University | Southeastern University | |
| 2006 | Spring Arbor University | Grace Bible College | |
| 2007 | Bethel College | Mid-America Christian University | |
| 2008 | Indiana Wesleyan University | Grace University | |
| 2009 | Emmanuel College (GA) | Grace Bible College | |
| 2010 | Northwestern College (MN) | Grace Bible College | |
| 2011 | Dallas Baptist University | Grace Bible College | |
| 2012 | Cedarville University | Grace Bible College | |
| 2013 | Shorter University | Ohio Christian University | |
| 2014 | Point Loma Nazarene | Ohio Christian University | |
| 2015 | Colorado Christian | Lancaster Bible | |
| 2016 | Emmanuel College (GA) | Hillsdale Free Will Baptist College | |
| 2017 | Colorado Christian | Randall University (fmr. Hillsdale Free Will) | |
| 2018 | Emmanuel College (GA) | Randall University | |
| 2019 | Cedarville University | Grace Christian University (fmr. Grace Bible) | |
| 2020 | No championships held – COVID-19 pandemic | ||
| 2021 | University of Northwestern – St. Paul | Johnson University | |
| 2022 | Baptist Bible College | Campbellsville University Harrodsburg | |
| 2023 | Bethel University (Indiana) | Kansas Christian College (Overland Park) | |