Mir-398 microRNA precursor family explained

mir-398
Symbol:	mir-398
Rfam:	RF00695
Mirbase Family:	MIPF0000107
Rna Type:	microRNA
Tax Domain:	Eukaryota

In molecular biology mir-398 microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms.

See also

• MicroRNA

Further reading

• Mendoza-Soto AB, Sánchez F, Hernández G . MicroRNAs as regulators in plant metal toxicity response . Frontiers in Plant Science . 3 . 105 . 2012 . 22661980 . 3356851 . 10.3389/fpls.2012.00105 . free .
• Burklew CE, Ashlock J, Winfrey WB, Zhang B . Effects of aluminum oxide nanoparticles on the growth, development, and microRNA expression of tobacco (Nicotiana tabacum) . PLOS ONE . 7 . 5 . e34783 . 2012 . 22606225 . 3350507 . 10.1371/journal.pone.0034783 . 2012PLoSO...734783B . Wu . Keqiang . free .
• Zhang J, Zhang S, Han S, Wu T, Li X, Li W, Qi L . Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis . Planta . 236 . 2 . 647–57 . August 2012 . 22526500 . 10.1007/s00425-012-1643-9 . 6776890 .
• Jung JH, Seo PJ, Ahn JH, Park CM . Arabidopsis RNA-binding protein FCA regulates microRNA172 processing in thermosensory flowering . The Journal of Biological Chemistry . 287 . 19 . 16007–16 . May 2012 . 22431732 . 3346135 . 10.1074/jbc.M111.337485 . free .
• Ren L, Tang G . Identification of sucrose-responsive microRNAs reveals sucrose-regulated copper accumulations in an SPL7-dependent and independent manner in Arabidopsis thaliana . Plant Science . 187 . 59–68 . May 2012 . 22404833 . 10.1016/j.plantsci.2012.01.014 .
• Sunkar R, Li YF, Jagadeeswaran G . Functions of microRNAs in plant stress responses . Trends in Plant Science . 17 . 4 . 196–203 . April 2012 . 22365280 . 10.1016/j.tplants.2012.01.010 .
• Guleria P, Yadav SK . Identification of miR414 and expression analysis of conserved miRNAs from Stevia rebaudiana . Genomics, Proteomics & Bioinformatics . 9 . 6 . 211–7 . December 2011 . 22289477 . 5054151 . 10.1016/S1672-0229(11)60024-7 .
• Zhao M, Tai H, Sun S, Zhang F, Xu Y, Li WX . Cloning and characterization of maize miRNAs involved in responses to nitrogen deficiency . PLOS ONE . 7 . 1 . e29669 . 2012 . 22235323 . 3250470 . 10.1371/journal.pone.0029669 . 2012PLoSO...729669Z . Pfeffer . Sebastien . free .
• Monavar Feshani A, Mohammadi S, Frazier TP, Abbasi A, Abedini R, Karimi Farsad L, Ehya F, Salekdeh GH, Mardi M . Identification and validation of Asteraceae miRNAs by the expressed sequence tag analysis . Gene . 493 . 2 . 253–9 . February 2012 . 22146318 . 10.1016/j.gene.2011.11.024 .
• Xu Z, Zhong S, Li X, Li W, Rothstein SJ, Zhang S, Bi Y, Xie C . Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots . PLOS ONE . 6 . 11 . e28009 . 2011 . 22132192 . 3223196 . 10.1371/journal.pone.0028009 . 2011PLoSO...628009X . Moustafa . Ahmed . free .
• Lu S, Yang C, Chiang VL . Conservation and diversity of microRNA-associated copper-regulatory networks in Populus trichocarpa . Journal of Integrative Plant Biology . 53 . 11 . 879–91 . November 2011 . 22013976 . 10.1111/j.1744-7909.2011.01080.x .
• Attallah CV, Welchen E, Martin AP, Spinelli SV, Bonnard G, Palatnik JF, Gonzalez DH . Plants contain two SCO proteins that are differentially involved in cytochrome c oxidase function and copper and redox homeostasis . Journal of Experimental Botany . 62 . 12 . 4281–94 . August 2011 . 21543521 . 10.1093/jxb/err138 . free .
• Zhu C, Ding Y, Liu H . MiR398 and plant stress responses . Physiologia Plantarum . 143 . 1 . 1–9 . September 2011 . 21496029 . 10.1111/j.1399-3054.2011.01477.x .
• Kantar M, Lucas SJ, Budak H . miRNA expression patterns of Triticum dicoccoides in response to shock drought stress . Planta . 233 . 3 . 471–84 . March 2011 . 21069383 . 10.1007/s00425-010-1309-4 . 27289636 .
• Bouché N . New insights into miR398 functions in Arabidopsis . Plant Signaling & Behavior . 5 . 6 . 684–6 . June 2010 . 20400846 . 3001559 . 10.4161/psb.5.6.11573 .
• Miura E, Kato Y, Sakamoto W . Comparative transcriptome analysis of green/white variegated sectors in Arabidopsis yellow variegated2: responses to oxidative and other stresses in white sectors . Journal of Experimental Botany . 61 . 9 . 2433–45 . May 2010 . 20400527 . 2877895 . 10.1093/jxb/erq075 .
• Book: Jia X, Mendu V, Tang G . An Array Platform for Identification of Stress-Responsive MicroRNAs in Plants . Plant Stress Tolerance . Methods in Molecular Biology . 639 . 253–69 . 2010 . 20387051 . 10.1007/978-1-60761-702-0_15 . 978-1-60761-701-3 .
• Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R . Transcriptome-wide identification of microRNA targets in rice . The Plant Journal . 62 . 5 . 742–59 . June 2010 . 20202174 . 10.1111/j.1365-313X.2010.04187.x . free .
• Ding YF, Wang GY, Fu YP, Zhu C . [The role of miR398 in plant stress responses] . Yi Chuan = Hereditas . 32 . 2 . 129–34 . February 2010 . 20176556 . 10.3724/sp.j.1005.2010.00129 . 29055138 .
• Beauclair L, Yu A, Bouché N . microRNA-directed cleavage and translational repression of the copper chaperone for superoxide dismutase mRNA in Arabidopsis . The Plant Journal . 62 . 3 . 454–62 . May 2010 . 20128885 . 10.1111/j.1365-313X.2010.04162.x .
• Lee H, Yoo SJ, Lee JH, Kim W, Yoo SK, Fitzgerald H, Carrington JC, Ahn JH . Genetic framework for flowering-time regulation by ambient temperature-responsive miRNAs in Arabidopsis . Nucleic Acids Research . 38 . 9 . 3081–93 . May 2010 . 20110261 . 2875011 . 10.1093/nar/gkp1240 .
• Gu M, Xu K, Chen A, Zhu Y, Tang G, Xu G . Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum . Physiologia Plantarum . 138 . 2 . 226–37 . February 2010 . 20015123 . 10.1111/j.1399-3054.2009.01320.x .
• Trindade I, Capitão C, Dalmay T, Fevereiro MP, Santos DM . miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula . Planta . 231 . 3 . 705–16 . February 2010 . 20012085 . 10.1007/s00425-009-1078-0 . 12943657 .
• Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ . Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing . Plant Physiology . 151 . 4 . 2120–32 . December 2009 . 19854858 . 2785986 . 10.1104/pp.109.147280 .
• Jia X, Wang WX, Ren L, Chen QJ, Mendu V, Willcut B, Dinkins R, Tang X, Tang G . Differential and dynamic regulation of miR398 in response to ABA and salt stress in Populus tremula and Arabidopsis thaliana . Plant Molecular Biology . 71 . 1–2 . 51–9 . September 2009 . 19533381 . 10.1007/s11103-009-9508-8 . 21096126 .
• Ding YF, Zhu C . The role of microRNAs in copper and cadmium homeostasis . Biochemical and Biophysical Research Communications . 386 . 1 . 6–10 . August 2009 . 19501049 . 10.1016/j.bbrc.2009.05.137 .
• Siré C, Moreno AB, Garcia-Chapa M, López-Moya JJ, San Segundo B . Diurnal oscillation in the accumulation of Arabidopsis microRNAs, miR167, miR168, miR171 and miR398 . FEBS Letters . 583 . 6 . 1039–44 . March 2009 . 19236868 . 10.1016/j.febslet.2009.02.024 . 10261/101742 . 25968907 . free .
• Jagadeeswaran G, Saini A, Sunkar R . Biotic and abiotic stress down-regulate miR398 expression in Arabidopsis . Planta . 229 . 4 . 1009–14 . March 2009 . 19148671 . 10.1007/s00425-009-0889-3 . 31993796 .
• Yamasaki H, Hayashi M, Fukazawa M, Kobayashi Y, Shikanai T . SQUAMOSA Promoter Binding Protein-Like7 Is a Central Regulator for Copper Homeostasis in Arabidopsis . The Plant Cell . 21 . 1 . 347–61 . January 2009 . 19122104 . 2648088 . 10.1105/tpc.108.060137 .
• Hewezi T, Howe P, Maier TR, Baum TJ . Arabidopsis small RNAs and their targets during cyst nematode parasitism . Molecular Plant-Microbe Interactions . 21 . 12 . 1622–34 . December 2008 . 18986258 . 10.1094/MPMI-21-12-1622 . free .
• Abdel-Ghany SE, Pilon M . MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis . The Journal of Biological Chemistry . 283 . 23 . 15932–45 . June 2008 . 18408011 . 3259626 . 10.1074/jbc.M801406200 . free .
• Dugas DV, Bartel B . Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases . Plant Molecular Biology . 67 . 4 . 403–17 . July 2008 . 18392778 . 10.1007/s11103-008-9329-1 . 22984450 .
• Yamasaki H, Pilon M, Shikanai T . How do plants respond to copper deficiency? . Plant Signaling & Behavior . 3 . 4 . 231–2 . April 2008 . 19704637 . 2634185 . 10.4161/psb.3.4.5094 .
• Buhtz A, Springer F, Chappell L, Baulcombe DC, Kehr J . Identification and characterization of small RNAs from the phloem of Brassica napus . The Plant Journal . 53 . 5 . 739–49 . March 2008 . 18005229 . 10.1111/j.1365-313X.2007.03368.x . free .
• Yamasaki H, Abdel-Ghany SE, Cohu CM, Kobayashi Y, Shikanai T, Pilon M . Regulation of copper homeostasis by micro-RNA in Arabidopsis . The Journal of Biological Chemistry . 282 . 22 . 16369–78 . June 2007 . 17405879 . 10.1074/jbc.M700138200 . free .
• Sunkar R, Kapoor A, Zhu JK . Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance . The Plant Cell . 18 . 8 . 2051–65 . August 2006 . 16861386 . 1533975 . 10.1105/tpc.106.041673 .