Mir-390 microRNA precursor family explained

mir-390
Symbol:mir-390
Rfam:RF00689
Mirbase Family:MIPF0000101
Rna Type:microRNA
Tax Domain:Eukaryota

In molecular biology mir-390 microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms.

See also

References

[1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30]

Notes and References

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  2. Zhang J, Zhang S, Han S, Wu T, Li X, Li W, Qi L . Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis . Planta . 236 . 2 . 647–57 . August 2012 . 22526500 . 10.1007/s00425-012-1643-9 . 6776890 .
  3. Jouannet V, Moreno AB, Elmayan T, Vaucheret H, Crespi MD, Maizel A . Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis . The EMBO Journal . 31 . 7 . 1704–13 . April 2012 . 22327216 . 3321200 . 10.1038/emboj.2012.20 .
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  12. Douglas RN, Wiley D, Sarkar A, Springer N, Timmermans MC, Scanlon MJ . ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves . The Plant Cell . 22 . 5 . 1441–51 . May 2010 . 20453116 . 2899878 . 10.1105/tpc.109.071613 .
  13. Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A . miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth . The Plant Cell . 22 . 4 . 1104–17 . April 2010 . 20363771 . 2879756 . 10.1105/tpc.109.072553 .
  14. Wang J, Gao X, Li L, Shi X, Zhang J, Shi Z . Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice . Journal of Experimental Botany . 61 . 6 . 1885–95 . June 2010 . 20080824 . 2852654 . 10.1093/jxb/erp378 .
  15. Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC . Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing . Proceedings of the National Academy of Sciences of the United States of America . 107 . 1 . 466–71 . January 2010 . 20018656 . 2806713 . 10.1073/pnas.0913203107 . 2010PNAS..107..466C . free .
  16. Yoon EK, Yang JH, Lim J, Kim SH, Kim SK, Lee WS . Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development . Nucleic Acids Research . 38 . 4 . 1382–91 . March 2010 . 19969544 . 2831332 . 10.1093/nar/gkp1128 .
  17. Krasnikova MS, Milyutina IA, Bobrova VK, Ozerova LV, Troitsky AV, Solovyev AG, Morozov SY . Novel miR390-dependent transacting siRNA precursors in plants revealed by a PCR-based experimental approach and database analysis . Journal of Biomedicine & Biotechnology . 2009 . 952304 . 2009 . 19859540 . 2762245 . 10.1155/2009/952304 . free .
  18. Aly R, Cholakh H, Joel DM, Leibman D, Steinitz B, Zelcer A, Naglis A, Yarden O, Gal-On A . Gene silencing of mannose 6-phosphate reductase in the parasitic weed Orobanche aegyptiaca through the production of homologous dsRNA sequences in the host plant . Plant Biotechnology Journal . 7 . 6 . 487–98 . August 2009 . 19490480 . 10.1111/j.1467-7652.2009.00418.x .
  19. Tedder P, Zubko E, Westhead DR, Meyer P . Small RNA analysis in Petunia hybrida identifies unusual tissue-specific expression patterns of conserved miRNAs and of a 24mer RNA . RNA . 15 . 6 . 1012–20 . June 2009 . 19369427 . 2685514 . 10.1261/rna.1517209 .
  20. Li H, Zhang Z, Huang F, Chang L, Ma Y . MicroRNA expression profiles in conventional and micropropagated strawberry (Fragaria x ananassa Duch.) plants . Plant Cell Reports . 28 . 6 . 891–902 . June 2009 . 19277667 . 10.1007/s00299-009-0693-3 . 10100284 .
  21. Felippes FF, Weigel D . Triggering the formation of tasiRNAs in Arabidopsis thaliana: the role of microRNA miR173 . EMBO Reports . 10 . 3 . 264–70 . March 2009 . 19180117 . 2658565 . 10.1038/embor.2008.247 .
  22. Nogueira FT, Chitwood DH, Madi S, Ohtsu K, Schnable PS, Scanlon MJ, Timmermans MC . Regulation of small RNA accumulation in the maize shoot apex . PLOS Genetics . 5 . 1 . e1000320 . January 2009 . 19119413 . 2602737 . 10.1371/journal.pgen.1000320 . Copenhaver . Gregory P . free .
  23. Abdurakhmonov IY, Devor EJ, Buriev ZT, Huang L, Makamov A, Shermatov SE, Bozorov T, Kushanov FN, Mavlonov GT, Abdukarimov A . Small RNA regulation of ovule development in the cotton plant, G. hirsutum L . BMC Plant Biology . 8 . 93 . September 2008 . 18793449 . 2564936 . 10.1186/1471-2229-8-93 . free .
  24. Takeda A, Iwasaki S, Watanabe T, Utsumi M, Watanabe Y . The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins . Plant & Cell Physiology . 49 . 4 . 493–500 . April 2008 . 18344228 . 10.1093/pcp/pcn043 . free .
  25. Montgomery TA, Howell MD, Cuperus JT, Li D, Hansen JE, Alexander AL, Chapman EJ, Fahlgren N, Allen E, Carrington JC . Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation . Cell . 133 . 1 . 128–41 . April 2008 . 18342362 . 10.1016/j.cell.2008.02.033 . 11174355 . free .
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  27. Axtell MJ, Jan C, Rajagopalan R, Bartel DP . A two-hit trigger for siRNA biogenesis in plants . Cell . 127 . 3 . 565–77 . November 2006 . 17081978 . 10.1016/j.cell.2006.09.032 . 1413712 . free .
  28. Talmor-Neiman M, Stav R, Klipcan L, Buxdorf K, Baulcombe DC, Arazi T . Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis . The Plant Journal . 48 . 4 . 511–21 . November 2006 . 17076803 . 10.1111/j.1365-313X.2006.02895.x . free .
  29. Fahlgren N, Montgomery TA, Howell MD, Allen E, Dvorak SK, Alexander AL, Carrington JC . Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis . Current Biology . 16 . 9 . 939–44 . May 2006 . 16682356 . 10.1016/j.cub.2006.03.065 . 401176 . free .
  30. Allen E, Xie Z, Gustafson AM, Carrington JC . microRNA-directed phasing during trans-acting siRNA biogenesis in plants . Cell . 121 . 2 . 207–21 . April 2005 . 15851028 . 10.1016/j.cell.2005.04.004 . 18056486 . free .

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