| Competition: | Meistriliiga |
| Season: | 2000 |
| Winners: | Levadia (2nd title) |
| League Topscorer: | Egidijus Juška (24) Toomas Krõm (24) |
| Prevseason: | 1999 |
| Nextseason: | 2001 |
The 2000 Meistriliiga was the tenth season of the Meistriliiga, Estonia's premier football league. Levadia won their second title.
Kuressaare were awarded the playoff after Tervis withdrew due to unavailability of players active for the Estonian U-18 team.
Each team played every opponent four times, twice at home and twice on the road, for a total of 36 games.
| Rank | Player | Club | Goals[1] | |
|---|---|---|---|---|
| 1 |  Egidijus Juška | TVMK | 24 | |
 Toomas Krõm | Levadia | |||
| 3 | Maksim Gruznov | Narva Trans | 23 | |
| 4 | Indro Olumets | Levadia | 13 | |
| Vitālijs Teplovs | TVMK | |||
| 6 | Marius Dovydėnas | Tulevik | 12 | |
| 7 | Sergei Bragin | Levadia | 11 | |
| 8 |  Dmitri Lipartov | Narva Trans | 10 | |
| Meelis Rooba | Flora | |||
| 10 | Dmitri Ustritski | Tulevik | 9 |