S-ribosylhomocysteine lyase explained

S-ribosylhomocysteine lyase
Ec Number:4.4.1.21
Cas Number:37288-63-4
Go Code:0043768
Symbol:LuxS
S-Ribosylhomocysteinase (LuxS)
Pfam:PF02664
Pfam Clan:CL0094
Interpro:IPR003815
Scop:1inn

The enzyme S-ribosylhomocysteine lyase (EC 4.4.1.21) catalyzes the reaction

S-(5-deoxy-D-ribos-5-yl)-L-homocysteine = L-homocysteine + (4S)-4,5-dihydroxypentan-2,3-dione

Nomenclature

This enzyme belongs to the family of lyases, specifically the class of carbon-sulfur lyases. The systematic name of this enzyme class is S-(5-deoxy-D-ribos-5-yl)-L-homocysteine L-homocysteine-lyase [(4''S'')-4,5-dihydroxypentan-2,3-dione-forming]. Other names in common use include S-ribosylhomocysteinase, and LuxS. This enzyme participates in methionine metabolism.

Structure and function

LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases.[1] Furthermore, LuxS is involved in the synthesis of autoinducer AI-2 (autoinducer-2), which mediates quorum sensing in roughly half of bacterial species. AI-2, a furanosyl borate diester, is a small signaling molecule generated by bacteria. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclisize to active AI-2.[2] [3] AI-2 is a signalling molecule that is believed to act in cross-species communication by regulating niche-specific genes with diverse functions, such as toxin production, biofilm formation, sporulation, and virulence gene expression, in various bacteria, often in response to population density. The AI-2 formation pathway begins with S-adenosyl-L-homocysteine (AdoHcy), which is hydrolyzed to S-adenosyl-L-homocysteine (SRH) and adenine by S-adenosyl-L-homocysteine/5’-methylthioadenosine nucleosidase (SAHN or MTAN, EC 3.2.2.9) (8-10). LuxS cleaves S-ribosyl-homocysteine to form L-homocysteine (Hcy) and 4,5-dihydroxy-2,3-pentanedione (DPD), which can then spontaneously cyclisize to active AI-2 (11-15). An unequivocally AI-2 related behavior was found to be restricted primarily to bacteria bearing known AI-2 receptor genes.[4] Thus, while it is certainly true that some bacteria can respond to AI-2, it is doubtful that it is always being produced for purposes of signaling.

Clinical significance

LuxS influences iron uptake in pneumococcal species, which also affects biofilm formation.[5] LuxS mutant D39luxS has reduced virulence when compared to wild type studies done on the intranasal channels of mice, and experiments have shown that this mutant also has significantly decreased biofilm formation capabilities.

Further reading

Notes and References

  1. Rajan R, Zhu J, Hu X, Pei D, Bell CE . Crystal structure of S-ribosylhomocysteinase (LuxS) in complex with a catalytic 2-ketone intermediate . Biochemistry . 44 . 10 . 3745–53 . March 2005 . 15751951 . 10.1021/bi0477384 .
  2. van Houdt R, Moons P, Jansen A, Vanoirbeek K, Michiels CW . Isolation and functional analysis of luxS in Serratia plymuthica RVH1 . FEMS Microbiology Letters . 262 . 2 . 201–9 . September 2006 . 16923076 . 10.1111/j.1574-6968.2006.00391.x . free .
  3. Zhu J, Patel R, Pei D . Catalytic mechanism of S-ribosylhomocysteinase (LuxS): stereochemical course and kinetic isotope effect of proton transfer reactions . Biochemistry . 43 . 31 . 10166–72 . August 2004 . 15287744 . 10.1021/bi0491088 .
  4. Rezzonico F, Duffy B . Lack of genomic evidence of AI-2 receptors suggests a non-quorum sensing role for luxS in most bacteria . BMC Microbiology . 8 . 154 . September 2008 . 18803868 . 2561040 . 10.1186/1471-2180-8-154 . free .
  5. Trappetti C, Potter AJ, Paton AW, Oggioni MR, Paton JC . LuxS mediates iron-dependent biofilm formation, competence, and fratricide in Streptococcus pneumoniae . Infection and Immunity . 79 . 11 . 4550–8 . November 2011 . 21875962 . 10.1128/IAI.05644-11 . 3257940 .