This is list of bays in Estonia. The list is incomplete.
| Name | Location | Further info | Image | Coordinates | |
|---|---|---|---|---|---|
| Ariste Bay | |||||
| Atla Bay | |||||
| Eeslaht (Haapsalu Eeslaht) | Part of Haapsalu Bay | ||||
| Eru Bay | Part of Gulf of Finland | ||||
| Gulf of Riga | Part of Baltic Sea | ||||
| Haapsalu Bay | |||||
| Hara Bay | |||||
| Hellamaa Bay | |||||
| Jausa Bay | |||||
| Kakumäe Bay | Part of Tallinn Bay | ||||
| Kasselaht | |||||
| Kasti Bay | |||||
| Kopli Bay | Part of Tallinn Bay | ||||
| Tallinn Bay | Part of Gulf of Finland | 59.5189°N 24.6683°W | |||
| Roadstead of Tallinn | Part of Tallinn Bay | ||||
| Harju Bay | Saare County | Nowadays a lake. | |||
| Kaugatoma Bay | |||||
| Kolga Bay | |||||
| Käsmu Bay | |||||
| Kahvatu Bay | Nowadays a lake. Its area is 5.2 ha. | ||||
| Lahepere Bay | |||||
| Linnulaht | Nowadays a lake. | ||||
| Lohusalu Bay | Harju County | ||||
| Matsalu Bay | Lääne County | ||||
| Narva Bay | Part of Gulf of Finland | ||||
| Oessaare Bay | Saare County | Now a lake, formerly a bay | |||
| Õunaku Bay | Hiiu County | Same as Salinõmme Bay | |||
| Paljassaare Bay | Part of Tallinn Bay | ||||
| Pärnu Bay | Part of Gulf of Riga | Its area is 411 km². | |||
| Saastna Bay | Width of 3.8 km | ||||
| Soonlepa Bay | Hiiu County | ||||
| Suur Katel | Its area is 158 km². | ||||
| Suuremõisa Bay | |||||
| Tagalaht | |||||
| Vaemla Bay | Hiiu County |