List of sequenced bacterial genomes explained

This list of sequenced eubacterial genomes contains most of the eubacteria known to have publicly available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched[1] on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases.

Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.

For the genomes of archaea see list of sequenced archaeal genomes.

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Corynebacterium diphtheriaeC7 (beta)Actinobacteridae2,499,189UnpublishedCP003210
Corynebacterium diphtheriaePW8Actinobacteridae2,530,683UnpublishedCP003216
Bifidobacterium longumNCC2705Actinobacteria2,256,6401,7272002[3]
Corynebacterium diphtheriaeNCTC13129Actinobacteria2,488,6352,3202003[4]
Corynebacterium efficiensYS314Actinobacteria3,147,0902,9422003[5]
Corynebacterium glutamicumATCC13032Actinobacteria3,309,4013,099Unpublished
Corynebacterium jeikeiumK411Actinobacteria2,462,4992,1042005[6]
Frankia speciesCcI3Actinobacteria5,433,6284,499Unpublished
Mycobacterium aviumk10Actinobacteria4,829,7814,3502005[7]
Mycobacterium bovisAF212297Actinobacteria4,345,4923,9532003[8]
Mycobacterium lepraeTNActinobacteria3,268,2032,7202001[9]
Mycobacterium tuberculosisCDC1551Actinobacteria4,403,8374,189Unpublished
Mycobacterium tuberculosisH37RvActinobacteria4,411,5323,9991998[10]
Nocardia farcinicaIFM10152Actinobacteria6,021,2255,6832004[11]
Streptomyces avermitilisMA4680Actinobacteria9,025,6087,5772001[12]
Streptomyces coelicolorA3Actinobacteria8,667,5077,8251996[13]
Symbiobacterium thermophilumStrainActinobacteria3,566,1353,3372004[14]
Thermobifida fuscaYXActinobacteria3,642,2493,110Unpublished

Bacteroidota/Chlorobiota group

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Bacteroides fragilisNCTC9343Bacteroidota5,205,1404,2602005[16] Chromosome CR626927
Plasmid pBF9343 CR626928
Bacteroides fragilisYCH46Bacteroidota5,277,2744,5782004[17] Chromosome AP006841
Plasmid pBFY46 AP006842
Bacteroides thetaiotaomicronVPI-5482Bacteroidota6,260,3614,7782003[18] Chromosome AE015928
Plasmid p5482 AY171301
Candidatus Amoebophilus asiaticus5a2Bacteroidota1,884,3642010[19] CP001102
Chlorobaculum parvumNCIB 8327Chlorobiota2,289,249DOE Joint Genome InstituteCP001099
Chlorobium chlorochromatiiCaD3Chlorobiota2,572,0792,002DOE Joint Genome InstituteCP000108
Chlorobium ferrooxidansDSM 13031ChlorobiotaDOE Joint Genome InstituteAASE00000000
Chlorobium limicolaDSM 245Chlorobiota2,763,181DOE Joint Genome InstituteNC_010803
Chlorobium phaeobacteroidesBS1Chlorobiota2,736,403DOE Joint Genome InstituteNC_010831
Chlorobium phaeobacteroidesDSM 266Chlorobiota3,133,902DOE Joint Genome InstituteNC_008639
Chlorobium phaeovibrioidesDSM 265Chlorobiota1,966,858DOE Joint Genome InstituteNC_009337
Chlorobium tepidumTLSChlorobiota2,154,9462,2552002[20] AE006470
Chloroherpeton thalassiumATCC 35110Chlorobiota3,293,456DOE Joint Genome InstituteCP001100
Cytophaga hutchinsoniiATCC 33406Chlorobiota4,433,2182007[21] CP000383
Haliscomenobacter hydrossisDSM 1100Bacteroidota8,371,6862011[22] Chromosome CP002691
Plasmid pHALHY01 CP002692
Plasmid pHALHY02 CP002693
Plasmid pHALHY03 CP002694
Ignavibacterium albumJCM 16511Ignavibacteriota3,658,997University of CopenhagenCP003418
Pelodictyon luteolum (Chlorobium luteolum)DSM 273Chlorobiota2,364,8422,083DOE Joint Genome InstituteCP000096
Pelodictyon phaeoclathratiformeBU-1Chlorobiota3,018,238DOE Joint Genome InstituteCP001110
Porphyromonas gingivalisATCC 33277Bacteroidota2,354,8862008[23] NC_010729
Porphyromonas gingivalisW83Bacteroidota2,343,4761,9092003[24] NC_002950
Prosthecochloris aestuariiDSM 271Chlorobiota2,512,923DOE Joint Genome InstituteChromosome CP001108
Plasmid pPAES01 CP001109
Salinibacter ruberDSM 13855Bacteroidota3,551,8232,801[25] NC_007677
Salinibacter ruberM8Bacteroidota3,619,447[26] Chromosome FP565814
Plasmid pSR11 FP565810
Plasmid pSR56 FP565811
Plasmid pSR61 FP565812
Plasmid pSR84 NC_014157
Saprospira grandisstr. LewinBacteroidota4,345,237University of Hawaii at ManoaChromosome CP002831
Plasmid CP002832

Chlamydiota/Verrucomicrobiota group

SpeciesStrainTypeBase PairsGenesReference
Akkermansia muciniphilaATCC BAA-835Verrucomicrobiota2,664,1022,176[27]
Akkermansia muciniphilaUrmiteVerrucomicrobiota2,664,7142,192[28]
Chlamydia muridarumNiggChlamydiota1,072,950904[29]
Chlamydia trachomatisAHAR13Chlamydiota1,044,459911[30]
Chlamydia trachomatisDUWChlamydiota1,042,519894[31]
Chlamydophila abortusS26-3Chlamydiota1,144,377961[32]
Chlamydophila caviaeGPICChlamydiota1,173,390998[33]
Chlamydophila felisFeC56Chlamydiota1,166,2391,005[34]
Chlamydophila pneumoniaeAR39Chlamydiota1,229,8531,110
Chlamydophila pneumoniaeCWL029Chlamydiota1,230,2301,052[35]
Chlamydophila pneumoniaeJ138Chlamydiota1,226,5651,069[36]
Chlamydophila pneumoniaeTW183Chlamydiota1,225,9351,113ALTANA Pharma
Parachlamy diaspeciesUWE25Chlamydiota2,414,4652,031[37]

Chloroflexota

SpeciesStrainTypeBase PairsGenesReference
Dehalococcoides mccartyi195Dehalococcoidetes1,469,7201,580[38]
Dehalococcoides mccartyiCBDB1Dehalococcoidetes1,395,5021,458[39]
Dehalococcoides mccartyiDCMB5Dehalococcoidetes1,431,9021,526[40]
Dehalococcoides mccartyiBTF08Dehalococcoidetes1,452,3351,580

Cyanobacteria

SpeciesStrainTypeBase PairsGenesReference
Anabaena nostocPCC7120Nostocales6,413,7715,368[41]
Anabaena variabilisATCC29413Nostocales6,365,7275,039DOE Joint Genome Institute
Cyanobacteria bacteriumYellowstoneAChroococcales2,932,7662,760[42]
Cyanobacteria bacteriumYellowstoneBChroococcales3,046,6822,862
Gloeobacter violaceusPCC7421Gloeobacteria4,659,0194,430[43]
Prochlorococcus marinusMED4Prochlorales1,657,9901,716[44]
Prochlorococcus marinusMIT9312Prochlorales1,709,2041,809Unpublished
Prochlorococcus marinusMIT9313Prochlorales2,410,8732,273
Prochlorococcus marinusNATL2AProchlorales1,842,8991,890Unpublished
Prochlorococcus marinusSS120Prochlorales1,751,0801,882[45]
Synechococcus elongatusPCC6301Chroococcales2,696,2552,525Unpublished
Synechococcus elongatusPCC7942Chroococcales2,695,9032,611Unpublished
Synechococcus speciesWH8102Chroococcales2,434,4282,526[46]
Synechococcus speciesCC9605Chroococcales2,510,6592,638Unpublished
Synechococcus speciesCC9902Chroococcales2,234,8282,304Unpublished
Synechocystis speciesPCC6803Chroococcales3,573,4703,167[47]
Thermosynechococcus elongatusbp1Chroococcales2,593,8572,475Unpublished

Deferribacterota

SpeciesStrainTypeBase PairsGenesReference
Geovibrio sp.Deferribacterota2,971,6582,415DOE Joint Genome Institute
Mucispirillum schaedleriASF457Deferribacterota2,319,180 2,144Broad Institute
Denitrovibrio acetiphilusDSM 12809Deferribacterota3,222,077 3,068[48]
Calditerrivibrio nitroreducensDSM 19672Deferribacterota2,157,835 2,117[49]
Deferribacter desulfuricansSSM1Deferribacterota2,234,389 2,184[50]
Flexistipes sinusarabiciDSM 4947Deferribacterota2,526,590 2,397[51]

Deinococcota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Deinococcus desertiVCD115Deinococcales2,819,842[52] Chromosome NC_012526
Plasmid 1 NC_012528
Plasmid 2 NC_012529
Plasmid 3 NC_012528
Deinococcus geothermalisDSM 11300Deinococcales2,467,2052,335DOE Joint Genome InstituteChromosome CP000359
Plasmid pDGEO01 CP000358
Plasmid pDGEO02 CP000856
Deinococcus gobiensisI-0Deinococcales3,137,147[53] Chromosome CP002191
Plasmid P1 CP002192
Plasmid P2 CP002193
Plasmid P3 CP002194
Plasmid P4 CP002195
Plasmid P5 CP002196
Plasmid P6 CP002197
Deinococcus maricopensisDSM 21211Deinococcales3,498,530US DOE Joint Genome InstituteCP002454
Deinococcus proteolyticusMRPDeinococcales2,147,060US DOE Joint Genome InstituteChromosome CP002536
Plasmid pDEIPR01 CP002537
Plasmid pDEIPR02 CP002538
Plasmid pDEIPR03 CP002539
Plasmid pDEIPR04 CP002540
Deinococcus radioduransR1DeinococcalesChromosome 1: 2,648,638
Chromosome 2: 412,348		Chromosome 1: 2,579
Chromosome 2: 357		[54] Chromosome 1 NC_001263
Chromosome 2 NC_001264
Plasmid CP1 NC_000959
Plasmid MP1 NC_000958
Marinithermus hydrothermalisDSM 14884Thermales2,269,167DOE Joint Genome InstituteCP002630
Meiothermus ruberDSM 1279Thermales3,097,457DOE Joint Genome InstituteCP001743
Meiothermus silvanusDSM 9946Thermales3,249,394[55] Chromosome CP002042
Plasmid pMESIL01 CP002043
Plasmid pMESIL02 CP002044
Oceanithermus profundusDSM 14977Thermales2,303,940DOE Joint Genome InstituteChromosome CP002361
Plasmid pOCEPR01
Thermus scotoductusSA-01Thermales2,346,803[56] Chromosome CP001962
Plasmid pTSC8 CP001963
Thermus speciesCCB_US3_UF1Thermales2,243,772Universiti Sains MalaysiaChromosome CP003126
Plasmid pTCCB09 CP003127
Thermus thermophilusHB27Thermales1,894,8771,982[57] Chromosome AE017221
Plasmid pTT27 AE017222
Thermus thermophilusHB8Thermales1,849,7421,973Nara Institute of Science and TechnologyChromosome NC_006461
Plasmid pTT27 NC_006462
Plasmid pTT8 NC_006463
Thermus thermophilusJL-18Thermales1,902,595DOE Joint Genome InstituteChromosome CP003252
Plasmid pTTJL1801 CP003253
Plasmid pTTJL1802 CP003254
Thermus thermophilusSG0.5JP17-16Thermales1,863,201DOE Joint Genome InstituteChromosome CP002777
Plasmid pTHTHE1601 CP002778
Truepera radiovictrixDSM 17093Deinococcales3,260,398DOE Joint Genome InstituteCP002049

Fibrobacterota/Acidobacteriota group

SpeciesStrainTypeBase PairsGenesReference
Acidobacteria bacteriumEllin345Acidobacteriota5,650,3684,777Unpublished
Leifsonia xyliCTCB07Acidobacteriota2,584,1582,030[58]
Propionibacterium acnesKPA171202Acidobacteriota2,560,2652,297[59]
Rubrobacter xylanophilusDSM9941Acidobacteriota3,225,7483,140DOE Joint Genome Institute
Tropheryma whippeliiTW08/27Acidobacteriota925,938784[60]
Tropheryma whippeliiTwistAcidobacteriota927,303808[61]

Bacillota

SpeciesStrainTypeBase PairsGenesReference
Bacillus anthracisAmesBacilli5,227,2935,311[62]
Bacillus anthracisSterneBacilli5,228,6635,287Unpublished
Bacillus cereusATCC10987Bacilli5,224,2835,603[63]
Bacillus cereusATCC14579Bacilli5,411,8095,234[64]
Bacillus cereusZKBacilli5,300,9155,134Unpublished
Bacillus clausiiKSMK16Bacilli4,303,8714,108[65]
Bacillus haloduransC125Bacilli4,202,3524,066[66]
Bacillus licheniformisATCC14580Bacilli4,222,3344,152[67]
Bacillus licheniformisUnspecifiedBacilli4,222,6454,196[68]
Bacillus licheniformisDSM13Bacilli4,222,6454,196
Bacillus subtilis168Bacilli4,214,6304,106[69]
Bacillus thuringiensis9727Bacilli5,237,6825,117[70]
Carboxydothermus hydrogenoformansZ2901Clostridia2,401,5202,620[71]
Clostridium acetobutylicumATCC824Clostridia3,940,8803,672[72]
Clostridium difficileQCD-32g58Clostridia3,840,681Unpublished
Clostridium perfringens13Clostridia3,031,4302,660[73]
Clostridium tetaniE88Clostridia2,799,2512,373[74]
Desulfitobacterium hafnienseY51Clostridia5,727,5345,060[75]
Enterococcus faecalisV583Bacilli3,218,0313,113[76]
Geobacillus kaustophilusHTA426Bacilli3,544,7763,498[77]
Lactobacillus acetotoleransNCFMBacilli
Lactobacillus acidophilusNCFMBacilli1,993,5641,864[78]
Lactobacillus delbrueckiibulgaricusBacilli1,864,9982,096Unpublished
Lactobacillus johnsoniiNCC533Bacilli1,992,6761,821[79]
Lactobacillus plantarumWCFS1Bacilli3,308,2743,051
Lactobacillus sakei23KBacilli1,884,6611,885Unpublished
Lactobacillus sakeisakei23KBacilli1,884,6611,885Unpublished
Lactobacillus salivariusUCC118Bacilli1,827,1111,717Unpublished
Lactococcus lactisIL1403Bacilli2,365,5892,266[80]
Listeria innocuaClip11262Bacilli3,011,2082,981[81]
Listeria monocytogenesEGDBacilli2,944,5282,855
Listeria monocytogenes4bBacilli2,905,1872,821[82]
Moorella thermoaceticaATCC39073Clostridia2,628,7842,465Unpublished
Oceanobacillus iheyensisHTE831Bacilli3,630,5283,496[83]
Staphylococcus aureusCOLBacilli2,809,4222,673[84]
Staphylococcus aureusMRSA252Bacilli2,902,6192,744[85]
Staphylococcus aureusMSSA476Bacilli2,799,8022,619
Staphylococcus aureusMu50Bacilli2,878,5292,699[86]
Staphylococcus aureusMW2Bacilli2,820,4622,632[87]
Staphylococcus aureusN315Bacilli2,814,8162,593
Staphylococcus aureusNCTC8325Bacilli2,821,3612,892Unpublished
Staphylococcus aureusRF122Bacilli2,742,5312,589Unpublished
Staphylococcus aureusUSA300Bacilli2,872,7692,560[88]
Staphylococcus epidermidisATCC12228Bacilli2,499,2792,419Unpublished
Staphylococcus epidermidisRP62ABacilli2,616,5302,494
Staphylococcus haemolyticusJCSC1435Bacilli2,685,0152,678[89]
Staphylococcus saprophyticussaprophyticusBacilli2,516,5752,446[90]
Streptococcus agalactiaeA909Bacilli2,127,8391,996[91]
Streptococcus agalactiaeNEM316Bacilli2,211,4852,134[92]
Streptococcus agalactiae2603 V/RBacilli2,160,2672,124[93]
Streptococcus mutansUAB159Bacilli2,030,9211,960[94]
Streptococcus pneumoniaeR6Bacilli2,038,6152,043[95]
Streptococcus pneumoniaeTIGR4Bacilli2,160,8422,125[96]
Streptococcus pyogenesM5ManfredoBacilli1,841,271Unpublished
Streptococcus pyogenesMGAS10270Bacilli1,928,2521,987[97]
Streptococcus pyogenesMGAS10394Bacilli1,899,8771,886[98]
Streptococcus pyogenesMGAS10750Bacilli1,937,1111,979
Streptococcus pyogenesMGAS2096Bacilli1,860,3551,898
Streptococcus pyogenesMGAS315Bacilli1,900,5211,865[99]
Streptococcus pyogenesMGAS5005Bacilli1,838,5541,865[100]
Streptococcus pyogenesMGAS6180Bacilli1,897,5731,894[101]
Streptococcus pyogenesMGAS8232Bacilli1,895,0171,845[102]
Streptococcus pyogenesMGAS9429Bacilli1,836,4671,877
Streptococcus pyogenesSF370Bacilli1,852,4411,696[103]
Streptococcus pyogenesSSI1Bacilli1,894,2751,861[104]
Streptococcus thermophilusCNRZ1066Bacilli1,796,2261,915[105]
Streptococcus thermophilusLMG18311Bacilli1,796,8461,889
Thermoanaerobacter tengcongensisMB4TClostridia2,689,4452,588Unpublished

Fusobacteriota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Fusobacterium nucleatumATCC25586Fusobacteria2,174,5002,067[106]
Fusobacterium sp.11_3_2FusobacteriaUnpublishedACUO00000000
Fusobacterium sp.21_1AFusobacteriaUnpublishedADEE00000000

Pseudomonadota

Alphaproteobacteria

SpeciesStrainTypeBase PairsGenesReference
Agrobacterium tumefaciensC58Alphaproteobacteria2,841,5812,722[107]
Anaplasma marginaleStMariesAlphaproteobacteria1,197,687949[108]
Anaplasma phagocytophilumHZAlphaproteobacteria1,471,2821,264[109]
Bartonella henselaeHouston-1Alphaproteobacteria1,931,0471,612[110]
Bartonella quintanaToulouseAlphaproteobacteria1,581,3841,308
Bradyrhizobium japonicumUSDA110Alphaproteobacteria9,105,8288,317[111]
Brucella abortus2308 (chromosome I)Alphaproteobacteria1,156,9481,164[112]
2308 (chromosome II)Alphaproteobacteria2,121,3592,186
Brucella abortus9-941 (chromosome I)Alphaproteobacteria2,124,2412,030[113]
9-941 (chromosome II)Alphaproteobacteria1,162,2041,055
Brucella melitensis16M (chromosome I)Alphaproteobacteria2,117,1442,059[114]
16M (chromosome II)Alphaproteobacteria1,177,7871,139
Brucella suis1330 (chromosome I)Alphaproteobacteria2,107,7942,123[115]
1330 (chromosome II)Alphaproteobacteria1,207,3811,150
Caulobacter crescentusCB15Alphaproteobacteria4,016,9473,737[116]
Ehrlichia canisJakeAlphaproteobacteria1,315,030925Unpublished
Ehrlichia chaffeensisArkansasAlphaproteobacteria1,176,2481,105
Ehrlichia ruminantiumGardelAlphaproteobacteria1,499,920950Unpublished
Ehrlichia ruminantiumWelgevondenAlphaproteobacteria1,512,977958Unpublished
UnspecifiedUnspecifiedAlphaproteobacteria1,516,355920[117]
Erythrobacter litoralisHTCC2594Alphaproteobacteria3,052,3983,011Unpublished
Gluconobacter oxydans621HAlphaproteobacteria2,702,1732,432[118]
Jannaschia speciesCCS1Alphaproteobacteria4,317,9774,212Unpublished
Magnetospirillum magneticumAMB1Alphaproteobacteria4,967,1484,559[119]
Mesorhizobium lotiMAFF303099Alphaproteobacteria7,036,0716,752[120]
Neorickettsia sennetsuMiyayamaAlphaproteobacteria859,006932
Nitrobacter hamburgensisX14Alphaproteobacteria4,406,9673,804Unpublished
Nitrobacter winogradskyiNb255Alphaproteobacteria3,402,0933,122Unpublished
Novosphingobium aromaticivoransDSM12444Alphaproteobacteria3,561,5843,324Unpublished
Pelagibacter ubiqueHTCC1062Alphaproteobacteria1,308,7591,354[121]
Rhizobium etliCFN42Alphaproteobacteria4,381,6084,067[122]
Rhizobium leguminosarumviciae3841Alphaproteobacteria7,751,3094,746Unpublished
Rhodobacter sphaeroides2.4.1Alphaproteobacteria3,188,6093,022Unpublished
UnspecifiedUnspecifiedAlphaproteobacteria943,016835Unpublished
Rhodopseudomonas palustrisBisB18Alphaproteobacteria5,513,8444,886Unpublished
Rhodopseudomonas palustrisBisB5Alphaproteobacteria4,892,7174,397Unpublished
Rhodopseudomonas palustrisCGA009Alphaproteobacteria5,459,2134,833[123]
Rhodopseudomonas palustrisHaA2Alphaproteobacteria5,331,6564,683Unpublished
Rhodospirillum rubrumATCC11170Alphaproteobacteria4,352,8253,791Unpublished
Rickettsia belliiRML369-CAlphaproteobacteria1,522,0761,429Unpublished
Rickettsia conoriiMalish7Alphaproteobacteria1,268,7551,374[124]
Rickettsia felisURRWXCal2Alphaproteobacteria1,485,1481,400[125]
Rickettsia prowazekiiMadrid-EAlphaproteobacteria1,111,523834[126]
Rickettsia typhiWilmingtonAlphaproteobacteria1,111,496838[127]
Silicibacter pomeroyiDSS3Alphaproteobacteria4,109,4423,810[128]
Silicibacter speciesTM1040Alphaproteobacteria3,200,9383,030Unpublished
Sinorhizobium medicaeWSM419Alphaproteobacteria3,781,9043,635[129]
Sinorhizobium melilotiRm1021Alphaproteobacteria3,654,1353,341[130]
Sphingopyxis alaskensisRB2256Alphaproteobacteria3,345,1703,165Unpublished
Wolbachia endosymbiontTRSAlphaproteobacteria1,080,084805[131]
Wolbachia pipientiswMelAlphaproteobacteria1,267,7821,195[132]
Zymomonas mobilisZM4Alphaproteobacteria2,056,4161,998[133]

Betaproteobacteria

SpeciesStrainTypeBase PairsGenesReference
Azoarcus sp.EbN1Betaproteobacteria4,296,2304,1282002[134]
Bordetella bronchisepticaRB50Betaproteobacteria5,339,1795,006Unpublished
Bordetella parapertussis12822Betaproteobacteria4,773,5514,402Unpublished
Bordetella pertussisTohamaIBetaproteobacteria4,086,1893,806Unpublished
Burkholderia cenocepaciaAU1054Betaproteobacteria3,294,5632,965Unpublished
UnspecifiedUnspecifiedBetaproteobacteria2,788,4592,472Unpublished
UnspecifiedUnspecifiedBetaproteobacteria1,196,0941,040Unpublished
Burkholderia malleiATCC23344Betaproteobacteria3,510,1482,996Unpublished
UnspecifiedUnspecifiedBetaproteobacteria2,325,3792,0292004[135]
Burkholderia pseudomallei1710bBetaproteobacteria4,126,2923,736Unpublished
UnspecifiedUnspecifiedBetaproteobacteria3,181,7622,611Unpublished
Burkholderia pseudomalleiK96243Betaproteobacteria4,074,542 (chromosome I)
3,173,005 (chromosome II)		3,460 (chromosome I)
2,395 (chromosome II)		2004
Burkholderia species383Betaproteobacteria3,694,1263,334Unpublished
UnspecifiedUnspecifiedBetaproteobacteria3,587,0823,174Unpublished
UnspecifiedUnspecifiedBetaproteobacteria1,395,0691,209Unpublished
Burkholderia thailandensisE264Betaproteobacteria3,809,2013,2762005[136]
UnspecifiedUnspecifiedBetaproteobacteria2,914,7712,3582005
Burkholderia xenovoransLB400Betaproteobacteria4,895,8364,430Unpublished
UnspecifiedUnspecifiedBetaproteobacteria3,363,5232,960Unpublished
UnspecifiedUnspecifiedBetaproteobacteria1,471,7791,312Unpublished
Chromobacterium violaceumATCC12472Betaproteobacteria4,751,0804,4072003[137]
Dechloromonas aromaticaRCBBetaproteobacteria4,501,1044,171Unpublished
Methylobacillus flagellatusKTBetaproteobacteria2,971,5172,753Unpublished
Neisseria gonorrhoeaeFA1090Betaproteobacteria2,153,9222,002Unpublished
Neisseria meningitidisserogroup A strain Z2491Betaproteobacteria2,184,4062,1212000[138]
Neisseria meningitidisserogroup B strain MC58Betaproteobacteria2,272,3602,0632000[139]
Nitrosomonas europaeaSchmidtBetaproteobacteria2,812,0942,5742003[140]
Nitrosospira multiformisATCC25196Betaproteobacteria3,184,2432,757Unpublished
Polaromonas speciesJS666Betaproteobacteria5,200,2644,817Unpublished
Ralstonia eutrophaJMP134Betaproteobacteria3,806,5333,439Unpublished
UnspecifiedUnspecifiedBetaproteobacteria2,726,1522,407Unpublished
Ralstonia metalliduransCH34Betaproteobacteria3,928,0893,601Unpublished
UnspecifiedUnspecifiedBetaproteobacteria2,580,0842,313Unpublished
Ralstonia solanacearumGMI1000Betaproteobacteria3,716,4133,4412002[141]
UnspecifiedUnspecifiedBetaproteobacteria2,094,5091,679
Rhodoferax ferrireducensDSM15236Betaproteobacteria4,712,3374,170Unpublished
Thiobacillus denitrificansATCC25259Betaproteobacteria2,909,8092,827Unpublished

Gammaproteobacteria

SpeciesStrainTypeBase PairsGenesReference
Acinetobacter sp.ADP1Gammaproteobacteria3,598,6213,3252004[142]
Baumannia cicadellinicolaHcGammaproteobacteria686,194595Unpublished
Blochmannia floridanusStrainGammaproteobacteria705,5575892003[143]
Blochmannia pennsylvanicusbpENGammaproteobacteria791,6546102005[144]
Buchnera aphidicolaAPSGammaproteobacteria640,6815642000[145]
Buchnera aphidicolaBGammaproteobacteria615,9805042003[146]
Buchnera aphidicolaSgGammaproteobacteria641,4545452002[147]
Carsonella ruddiiPVGammaproteobacteria159,6621822006[148]
Chromohalobacter salexigensDSM3043Gammaproteobacteria3,696,6493,298Unpublished
Colwellia psychrerythraea34HGammaproteobacteria5,373,1804,910Unpublished
Coxiella burnetiiRSA493Gammaproteobacteria1,995,2812,0162003[149]
Erwinia carotovoraSCRI1043Gammaproteobacteria5,064,0194,492Unpublished
Escherichia coli536Gammaproteobacteria4,938,9204,685Unpublished
Escherichia coliCFT073Gammaproteobacteria5,231,4285,3792002[150]
Escherichia coliK-12Gammaproteobacteria4,639,675 (4,646,332)4,331 (4,337)1997,[151] 2005[152]
Escherichia coliO157:H7Gammaproteobacteria5,528,445 (5,498,450)5,349 (5,361)2001,[153] 1999[154]
Escherichia coliUTI89Gammaproteobacteria5,065,7415,066Unpublished
Francisella tularensisLVSGammaproteobacteria1,895,9941,967Unpublished
Francisella tularensisSCHUS4Gammaproteobacteria1,892,8191,8042005[155]
Haemophilus ducreyi3500HPGammaproteobacteria1,698,9551,717Unpublished
Haemophilus influenzae86-028NPGammaproteobacteria1,913,4281,7922005[156]
Haemophilus influenzaeRdGammaproteobacteria1,830,1381,7091995[157]
Hahella chejuensisKCTC2396Gammaproteobacteria7,215,2676,7822005[158]
Idiomarina loihiensisL2TRGammaproteobacteria2,839,3182,6282004[159]
Legionella pneumophilaLensGammaproteobacteria3,345,6872,9472004[160]
Legionella pneumophilaParisGammaproteobacteria3,503,6103,0822004
Legionella pneumophilaPhiladelphia1Gammaproteobacteria3,397,7542,942Unpublished
Mannheimia succiniciproducensMBEL55EGammaproteobacteria2,314,0782,384Unpublished
Methylococcus capsulatusBathGammaproteobacteria3,304,5612,9602004[161]
Nitrosococcus oceaniATCC19707Gammaproteobacteria3,481,6912,976Unpublished
Pasteurella multocidaPm70Gammaproteobacteria2,257,4872,0142001[162]
Photobacterium profundumSS9Gammaproteobacteria4,085,3043,416Unpublished
UnspecifiedUnspecifiedGammaproteobacteria2,237,9431,997Unpublished
Photorhabdus luminescenslaumondiiTTO1Gammaproteobacteria5,688,9874,905Unpublished
Pseudoalteromonas haloplanktisTAC125Gammaproteobacteria3,214,9442,9412005[163]
UnspecifiedUnspecifiedGammaproteobacteria635,328546
Pseudomonas aeruginosaVRFPA04Gammaproteobacteria6,818,0305,9392016[164]
Pseudomonas entomophilaL48Gammaproteobacteria5,888,7805,168Unpublished
Pseudomonas fluorescensPf-5Gammaproteobacteria7,074,8936,1372005[165]
Pseudomonas fluorescensPfO-1Gammaproteobacteria6,438,4055,736Unpublished
Pseudomonas putidaKT2440Gammaproteobacteria6,181,8635,3502002[166]
Pseudomonas syringaeB728aGammaproteobacteria6,093,6985,1362005[167]
Pseudomonas syringaeDC3000Gammaproteobacteria6,397,1265,4702003[168]
Pseudomonas syringaephaseolicola1448AGammaproteobacteria5,928,7874,983Unpublished
Psychrobacter arcticum273-4Gammaproteobacteria2,650,7012,147Unpublished
Psychrobacter cryohalolentisK5Gammaproteobacteria~3.1Mb2,575[169]
UnspecifiedUnspecifiedGammaproteobacteria3,059,8762,467Unpublished
Saccharophagus degradansFeb-40Gammaproteobacteria5,057,5314,008Unpublished
Salmonella entericaATCC9150Gammaproteobacteria4,585,2294,0932004[170]
Salmonella entericaSCB67Gammaproteobacteria4,755,7004,4452005[171]
Salmonella entericaTy2Gammaproteobacteria4,791,9614,3232003[172]
Salmonella entericatyphiCT18Gammaproteobacteria4,809,0374,6002001[173]
Salmonella typhimuriumLT2Gammaproteobacteria4,857,4324,4522001[174]
Shewanella denitrificansOS217Gammaproteobacteria4,545,9063,754Unpublished
Shewanella oneidensisMR1Gammaproteobacteria4,969,8034,6302002[175]
Shigella boydiiSb227Gammaproteobacteria4,519,8234,1422005[176]
Shigella dysenteriaeSd197Gammaproteobacteria4,369,2324,2772005
Shigella flexneri2457TGammaproteobacteria4,599,3544,0732003[177]
Shigella flexneri2a301Gammaproteobacteria4,607,2034,4362002[178]
Shigella sonneiSs046Gammaproteobacteria4,825,2654,2242005
Sodalis glossinidiusmorsitansGammaproteobacteria4,171,1462,4322006[179]
Thiomicrospira crunogenaXCL2Gammaproteobacteria2,427,7342,192Unpublished
Vibrio choleraeN16961Gammaproteobacteria2,961,149 (chromosome I)
1,072,315 (chromosome II)		2,736 (chromosome I)
1,092 (chromosome II)		2000[180]
Vibrio fischeriES114Gammaproteobacteria2,906,179 (chromosome I)
1,332,022 (chromosome II)		2,575 (chromosome I)
1,172 (chromosome II)		2005[181]
Vibrio parahaemolyticusRIMD2210633Gammaproteobacteria3,288,558 (chromosome I)
1,877,212 (chromosome II)		3,080 (chromosome I)
1,752 (chromosome II)		2000[182]
Vibrio vulnificusCMCP6Gammaproteobacteria3,281,944 (chromosome I)
1,844,853 (chromosome II)		2,973 (chromosome I)
1,565 (chromosome II)		2003[183]
Vibrio vulnificusYJ016Gammaproteobacteria3,354,505 (chromosome I)
1,857,073 (chromosome II)		3,262 (chromosome I)
1,697 (chromosome II)		2003[184]
Wigglesworthia glossinidiaStrainGammaproteobacteria697,7246112002[185]
Xanthomonas axonopodiscitri306Gammaproteobacteria5,175,5544,3122002[186]
Xanthomonas campestris8004Gammaproteobacteria5,148,7084,2732005[187]
Xanthomonas campestris8510Gammaproteobacteria5,178,4664,4872005[188]
Xanthomonas campestrisATCC33913Gammaproteobacteria5,076,1884,1812002
Xanthomonas oryzaeKACC10331Gammaproteobacteria4,941,4394,6372005[189]
Xanthomonas oryzaeMAFF311018Gammaproteobacteria4,940,2174,372Unpublished
Xylella fastidiosa9a5cGammaproteobacteria2,679,3062,7662000[190]
Xylella fastidiosaTemecula1Gammaproteobacteria2,519,8022,0342003[191]
Yersinia pestisAntiquaGammaproteobacteria4,702,2894,1672006[192]
Yersinia pestisCO-92BiovarOrientalisGammaproteobacteria4,653,7284,0082001[193]
Yersinia pestisKIMGammaproteobacteria4,600,7554,0902002[194]
Yersinia pestisMediaevalisGammaproteobacteria4,595,0653,8952004[195]
Yersinia pseudotuberculosisIP32953Gammaproteobacteria4,744,6713,9742004[196]

Zetaproteobacteria

Myxococcota–Campylobacterota

SpeciesStrainTypeBase PairsGenesReference
Anaeromyxobacter dehalogenans2CP-Cdelta-epsilon5,013,4794,346Unpublished
Bdellovibrio bacteriovorusHD100delta-epsilon3,782,9503,5832004[197]
Campylobacter jejuniNCTC11168delta-epsilon1,641,4811,6432000[198]
Campylobacter jejuniRM1221delta-epsilon1,777,8311,8382005[199]
Desulfotalea psychrophilaLSv54delta-epsilon3,523,3833,118Unpublished
Desulfovibrio desulfuricansG20delta-epsilon3,730,2323,775Unpublished
Desulfovibrio vulgarisHildenboroughdelta-epsilon3,570,8583,3792004[200]
Geobacter metallireducensGS15delta-epsilon3,997,4203,519Unpublished
Geobacter sulfurreducensPCAdelta-epsilon3,814,1393,4472003[201]
Helicobacter hepaticusATCC51449delta-epsilon1,799,1461,8752003[202]
Helicobacter pylori26695delta-epsilon1,667,8671,5661997[203]
Helicobacter pyloriHPAG1delta-epsilon1,596,3661,536Unpublished
Helicobacter pyloriJ99delta-epsilon1,643,8311,4911999[204]
Lawsonia intracellularisPHEMN1-00delta-epsilon1,719,0141,344Unpublished
Lawsonia intracellularisPHE/MN1-00delta-epsilon1,457,619 (chromosome)
27,048 (plasmid A)
39,794 (plasmid B)
194,553 (plasmid C)		1,187
29 (plasmid A)
24 (plasmid B)
104 (plasmid C)		2013[205]
Myxococcus xanthusDK1622delta-epsilon9,139,7637,331Unpublished
Pelobacter carbinolicusDSM2380delta-epsilon3,665,8933,119Unpublished
Sorangium cellulosumSo ce56delta-epsilon13,033,7799,3672007[206]
Sulfurimonas denitrificansDSM1251delta-epsilon2,201,5612,1042007[207]
Syntrophus aciditrophicusSBdelta-epsilon3,179,3003,168Unpublished
Thiomicrospira denitrificansATCC33889delta-epsilon2,201,5612,097Unpublished
Wolinella succinoDSMZ1740delta-epsilon2,110,3552,0442003[208]

Spirochaetota

SpeciesStrainTypeBase PairsGenesReference
Borrelia burgdorferiB31Spirochaetota910,724850[209]
Borrelia gariniiPBiSpirochaetota904,246832[210]
Leptospira interrogans56601Spirochaetota4,332,2414,358[211]
UnspecifiedUnspecifiedSpirochaetota358,943367
Leptospira interrogansFiocruzL1130Spirochaetota4,277,1853,394[212]
UnspecifiedUnspecifiedSpirochaetota350,181264
Treponema denticolaATCC35405Spirochaetota2,843,2012,767[213]
Treponema pallidumNicholsSpirochaetota1,138,0111,031[214]

Mycoplasmatota

SpeciesStrainTypeBase PairsGenesReferenceGenBank Identifier
Mesoplasma florumL1Mollicutes793,224683Unpublished
Mycoplasma anatis1340, ATCC 25524Mollicutes[215] AFVJ00000000
Mycoplasma capricolumATCC273Mollicutes1,010,023812Unpublished
Mycoplasma gallisepticumRMollicutes996,422726[216]
Mycoplasma genitaliumG37Mollicutes580,076476[217]
Mycoplasma haemocanisIllinoisMollicutes919,992UnpublishedCP003199
Mycoplasma hyopneumoniae232Mollicutes892,758691[218]
Mycoplasma hyopneumoniae7448Mollicutes920,079663[219]
Mycoplasma hyopneumoniaeJMollicutes897,405665
Mycoplasma hyorhinisGDL-1Mollicutes837,480UnpublishedCP003231
Mycoplasma leachii99/014/6Mollicutes1,017,232UnpublishedFR668087
Mycoplasma mobile163KMollicutes777,079635[220]
Mycoplasma mycoidesSCMollicutes1,211,7031,016[221]
Mycoplasma penetransHF2Mollicutes1,358,6331,037[222]
Mycoplasma pneumoniaeM129Mollicutes816,394688[223]
Mycoplasma pulmonisUABMollicutes963,879782[224]
Mycoplasma synoviae53Mollicutes799,476672
Phytoplas maasterisAYWBMollicutes706,569671Unpublished
Phytoplas maasterisOYMollicutes860,631754[225]
Ureaplasma urealyticumserovar3Mollicutes751,719611[226]

Thermodesulfobacteriota

SpeciesStrainTypeBase PairsGenesReference
Thermodesulfatator indicusCIR29812(T)Thermodesulfobacteriota2,322,224 2,2912012[227]
Thermodesulfobacterium geofontisOPF15(T)Thermodesulfobacteriota1,634,3771,6352013[228]

Thermotogota

SpeciesStrainTypeBase PairsGenesReference
Fervidobacterium nodosumRt17-B1Thermotogota1,950,0001,7502009[229]
Kosmotoga oleariaTBF 19.5.1Thermotogota2,302,1262,1182011[230]
Mesotoga primaMesG1.Ag.4.2Thermotogota2,974,229 chromosome
1,724 plasmid		2,7362012[231]
Thermosipho africanusTCF52BThermotogota2,016,6572,0002009[232]
Thermosipho melanesiensisBI429Thermotogota1,920,0001,8792009
Thermotoga lettingaeTMOThermotogota2,140,0002,0402009
Thermotoga maritimaMSB8Thermotogota1,860,7251,8461999,[233] 2013[234]
Thermotoga petrophilaRKU-1Thermotogota1,820,0001,7852009

See also

References

External links

Notes and References

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