List of sequenced plant genomes explained

This list of sequenced plant genomes contains plant species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For all kingdoms, see the list of sequenced genomes.

See also List of sequenced algae genomes.

Organism strain Division Relevance Genome size Number of genes predicted Organization Year of completion Assembly status
Anthoceros angustus Early diverging land plant
Ceratodon purpureus Early diverging land plant
Fontinalis antipyretica (greater water-moss)BryophytesAquatic moss385.2 Mbp16,538BGI2020[1] BGISEQ-500 & 10X, scaffold N50 45.8 Kbp
Marchantia polymorphaBryophytesEarly diverging land plant225.8 Mb19,1382017[2]
Physcomitrella patens ssp. patens str. Gransden 2004 Early diverging land plant 462.3 Mbp35,9382008[3]
Pleurozium schreberi (feather moss)BryophytesUbiquitous moss species318 Mbp15,9922019[4]

Lycophytes

Organism strain Division Relevance Genome size Number of genes predicted Organization Year of completion Assembly status
Isoetes sinensisLycopodiophytaFirst aquatic Quillwort2.131 GB57,3032023[5] Scaffold N50 = 86 Mb
Selaginella moellendorffii Model organism 106 Mb22,2852011[6] [7] scaffold N50 = 1.7 Mb
Selaginella lepidophyllaLycopodiophytaDesiccation tolerance122 Mb27,2042018[8] contig N50 = 163 kb

Ferns

Organism strainDivision Relevance Genome size Number of genes predicted Organization Year of completion Assembly status
Azolla filiculoidesPolypodiophytaFern 0.75 Gb20,201 2018[9]
Salvinia cucullataPolypodiophytaFern0.26 Gb19,9142018
Ceratopteris richardiiPolypodiophytaModel organism7.5 Gb 36,8572019 (v1.1),[10] 2021 (v2.1)[11] Partial assembly consisting of 7.5 Gb/11.2 Gb, arranged in 39 chromosomes
Alsophila spinulosaPolypodiophytaTree Fern6.23 Gb67,8312022[12]

Gymnosperms

Organism strainDivision Relevance Genome size Number of genes predicted No of chromosomesOrganization Year of completion Assembly status
Cycas panzhihuaensis (Dukou sago palm)CycadophytaRare and vulnerable species of cycad10.5 Gb2022[13]
Picea abies (Norway spruce)PinalesTimber, tonewood, ornamental such as Christmas tree19.6 Gb26,359[14] 12Umeå Plant Science Centre / SciLifeLab, Sweden2013[15]
Picea glauca (White spruce)PinalesTimber, Pulp20.8 Gb14,46212Institutional Collaboration2013[16] [17]
Pinus taeda (Loblolly pine)PinalesTimber20.15 Gb9,024122014[18] [19] [20] N50 scaffold size: 66.9 kbp
Pinus lambertiana (Sugar pine)PinalesTimber; with the largest genomes among the pines;

the largest pine species

31 Gb13,93612201661.5X sequence coverage, platforms used:

Hiseq 2000, Hiseq 2500, GAIIx, MiSeq

Ginkgo bilobaGinkgoales11.75 Gb41,8402016[21] N50 scaffold size: 48.2 kbp
Pseudotsuga menziesiiPinales16 Gb54,830132017[22] N50 scaffold size : 340.7 kbp
Gnetum monatumGnetales4.07 Gb27,4912018[23]
Larix sibirica Pinales12.34 Gbp2019[24] scaffold N50 of 6440 bp
Abies albaPinales18.16 Gb94,2052019[25] scaffold N50 of 14,051 bp

Chlorantales

Magnoliales
Organism strain Family Relevance Genome size Number of genes predicted Organization Year of completion Assembly status
Annona muricata Commercially grown fruit, medicinal applications 799.11 Mb23,375Institute for Biodiversity and Environmental Research (UBD)Alliance for Conservation Tree Genomics

Biodiversity Genomics Team

2021[30] PacBio and Illumina short‐reads, in combination with 10× Genomics and Bionano data (v1). A total of 949 scaffolds assembled to a final size of 656.77 Mb, with a scaffold N50 of 3.43 Mb (v1), and then further improved to seven pseudo‐chromosomes using Hi‐C sequencing data (v2; scaffold N50: 93.2 Mb, total size in chromosomes: 639.6 Mb).
Salix arbutifolia
(syn. Chosenia arbutifolia)		SalicaceaeSeriously endangered relic species338.93 Mb33,2292022[31] Contig N50 of 1.68 Mb
Cinnamomum kanehirae (Stout camphor tree)730.7 Mb2019[32]

Eudicots

Organism strain Family Relevance Genome size Number of genes predicted Organization Year of completion Assembly status
Macadamia integrifolia HAES 741 (Macadamia nut)ProteaceaeCommercially grown nut745 Mb34,2742020[33] N50 413 kb
Macadamia janseniiProteaceaeRare relative of macademia nut750 Mbp2020[34] Compared Nanopore, Illumina and BGI stLRF data
Nelumbo nucifera (sacred lotus) Basal eudicot 929 Mbp2013[35] contig N50 of 38.8 kbp and a scaffold N50 of 3.4 Mbp
Organism strain Family Relevance Genome size Number of genes predicted Organization Year of completion Assembly status
Beta vulgaris (sugar beet)Crop plant 714–758 Mbp 27,421 2013[38]
Chenopodium quinoaChenopodiaceaeCrop plant1.39–1.50 Gb44,7762017[39] 3,486 scaffolds, scaffold N50 of 3.84 Mb, 90% of the assembled genome is contained in 439 scaffolds
Amaranthus hypocondriacusAmaranthaceaeCrop plant403.9 Mb23,8472016[40] 16 large scaffolds from 16.9 to 38.1 Mb. N50 and L50 of the assembly was 24.4 Mb and 7, respectively.[41]
Carnegiea giganteaCactaceaeWild plant1.40 Gb28,2922017[42] 57,409 scaffolds, scaffold N50 of 61.5 kb
Nepenthes mirabilisNepenthesCarnivorous Plant691 Mb42,9612023[43] 159,555 contigs/scaffolds and N50 of 10,307 bp
Suaeda aralocaspica AmaranthaceaePerforms complete C4 photosynthesis within individual cells (SCC4)467 Mb29,604ABLife Inc.2019[44] 4,033 scaffolds, scaffold N50 length of 1.83 Mb
Simmondsia chinensis (jojoba)SimmondsiaceaeOilseed Crop887 Mb23,4902020[45] 994 scaffolds, scaffold N50 length of 5.2 Mb
Drosera capensisDroseraceaeCarnivorous Plant263.79 Mb2016[46] 12,713 scaffolds
Tamarix chinensis (Chinese tamarisk)TamaricaceaeMargin tree1.32 Gb2023[47]
Organism strain Family Relevance Genome size Number of genes predicted No of chromosomesOrganization Year of completion Assembly status
Bretschneidera sinensisAkaniaceaeendangered relic tree species1.21 Gb45,8392022[48]
Sclerocarya birrea(Marula)AnacardiaceaeUsed for food18,3972018[49] [50]
Betula pendula (silver birch) Boreal forest tree, model for forest biotechnology 435 Mbp28,39914University of Helsinki 2017[51] 454/Illumina/PacBio. Assembly size 435 Mbp. Contig N50: 48,209 bp, scaffold N50: 239,796 bp. 89% of the assembly mapped to 14 pseudomolecules. Additionally 150 birch individuals sequenced.
Betula platyphylla (Japanese white birch)BetulaceaePioneer hardwood tree species430 Mbp 2021[52] contig N50 = 751 kbp
Betula nana (dwarf birch) Arctic shrub 450 Mbp QMUL/SBCS 2013[53]
Corylus heterophylla Fisch (Asian hazel)BetulaceaeNut tree used for food370.75 Mbp27,591112021[54] Nanopore/Hi-C chromosome scale. Contig N50 and scaffold N50 sizes of 2.07 and 31.33  Mb, respectively
Corylus mandshuricaBetulaceaeHazel used for breeding367.67 Mb28,409112021[55]
Aethionema arabicum Comparative analysis of crucifer genomes 2013[56]
Arabidopsis lyrata ssp. lyrata strain MN47 Model plant 206.7 Mbp32,67082011[57] 8.3X sequence coverage, analyzed on ABI 3730XL capillary sequencers
Arabidopsis thaliana Ecotype:Columbia Model plant 135 Mbp 27,655[58] 5AGI2000[59]
Barbarea vulgarisG-typeBrassicaceaeModel plant for specialised metabolites and plant defenses167.7 Mbp25,35082017[60] 66.5 X coverage with Illumina GA II technology
Brassica rapa ssp. pekinensis (Chinese cabbage) accession Chiifu-401-42 Assorted crops and model organism 485 Mbp41,174 (has undergone genome triplication)10The Brassica rapa Genome Sequencing Project Consortium2011[61] 72X coverage of paired short read sequences generated by Illumina GA II technology
Brassica napus (Oilseed rape or rapeseed) European winter oilseed cultivar 'Darmor-bzh'BrassicaceaeCrops1130 Mbp101,04019Institutional Collaboration2014[62] 454 GS-FLX+ Titanium (Roche, Basel, Switzerland) and Sanger sequencing. Correction and gap filling used 79 Gb of Illumina (San Diego, CA) HiSeq sequence.
Capsella rubella Close relative of Arabidopsis thaliana 130 Mbp 26,521JGI 2013?[63] 2013[64]
Cardamine hirsuta (hairy bittercress) strain 'Oxford' BrassicaceaeA model system for studies in evolution of plant development198 Mbp29,4588Max Planck Institute for Plant Breeding Research, Köln, Germany2016[65] Shotgun sequencing strategy, combining paired end reads (197× assembled sequence coverage) and mate pair reads (66× assembled) from Illumina HiSeq (a total of 52 Gbp raw reads).
Eruca sativa (salad rocket)BrassicaceaeUsed for food851 Mbp45,438University of Reading2020[66] Illumina MiSeq and HiSeq2500. PCR free paired end and long mate pair sequencing and assembly. Illumina HiSeq transcriptome sequencing (125/150 bp paired end reads).
Erysimum cheiranthoides (wormseed wallflower) strain 'Elbtalaue'BrassicaceaeModel plant for studying defensive chemistry, including cardiac glycosides175 Mbp29,9478Boyce Thompson Institute, Ithaca, NY2020[67] [68] 39.5 Gb PacBio sequences (average length 10,603 bp), one lane Illumina MiSeq sequencing (2 x 250 bp paired end), Phase Genomics Hi-C scaffolding, PacBio and Illumina transcriptome sequencing
Eutrema salsugineum A relative of arabidopsis with high salt tolerance 240 Mbp 26,351JGI 2013[69]
Eutrema parvulum Comparative analysis of crucifer genomes 2013
Leavenworthia alabamica Comparative analysis of crucifer genomes 2013
Sisymbrium irio Comparative analysis of crucifer genomes 2013
Thellungiella parvula A relative of arabidopsis with high salt tolerance 2011[70]
Cannabis sativa (hemp) Hemp and marijuana production ca 820 Mbp30,074 based on transcriptome assembly and clustering2011[71] Illumina/454

scaffold N50 16.2 Kbp

Capparis spinosa var. herbacea (Caper)CapparaceaeCrop274.53 Mb21,5772022[72] contig N50 9.36 Mb
Carica papaya (papaya)Fruit crop 372 Mbp28,6292008[73] contig N50 11kbp

scaffold N50

1Mbp

total coverage ~3x (Sanger)

92.1% unigenes mapped

235Mbp anchored (of this 161Mbp also oriented)

Casuarina equisetifolia(Australian Pine)Casuarinaceaebonsai subject 300 Mbp29,8272018[74]
Tripterygium wilfordii (Lei gong teng)CelastraceaeChinese medicine crop340.12 Mbp31,593 2021[75] Contig N50 3.09 Mbp
Cleome gynandra (African cabbage)CleomaceaeC4 leafy vegetable and medicinal plant740 Mb30,9332023[76] N50 of 42 Mb
Kalanchoë fedtschenkoi Raym.-Hamet & H. PerrierKalanchoe Molecular genetic model for obligate CAM species in the eudicots256 Mbp30,964342017[77] ~70× paired-end reads and ~37× mate-pair reads generated using an Illumina MiSeq platform.
Rhodiola crenulata (Tibetan medicinal herb)CrassulaceaeUses for medicine and food344.5 Mb35,5172017[78]
Citrullus lanatus (watermelon) Vegetable crop ca 425 Mbp23,4402012[79] Illumina

coverage 108.6x

contig N50 26.38 kbp

Scaffold N50 2.38 Mbp

genome covered 83.2%

~97% ESTs mapped

Cucumis melo (Muskmelon) DHL92 Vegetable crop 450 Mbp27,4272012[80] 454

13.5x coverage

contig N50: 18.1kbp

scaffold N50: 4.677 Mbp

WGS

Cucumis sativus (cucumber) 'Chinese long' inbred line 9930 Vegetable crop 350 Mbp (Kmer depth) 367 Mbp (flow cytometry)26,682 2009[81] contig N50 19.8kbp

scaffold N50 1,140kbp

total coverage ~72.2 (Sanger + Ilumina)

96.8% unigenes mapped

72.8% of the genome anchored

Cucurbita argyrosperma subsp. argyrosperma(Silver-seed gourd)CucurbitaceaeSeed and fruit crop228.8 Mbp27,99820National Autonomous University of Mexico2019,[82] updated in 2021contig N50 447 kbpscaffold N50 11.6 Mbp

total coverage: 120x Illumina (HiSeq2000 and MiSeq) + 31x PacBio RSII

Cucurbita argyrosperma subsp. sororia(wild gourd)CucurbitaceaeWild relative of the silver-seed gourd255.2 Mbp30,59220National Autonomous University of Mexico2021[83] contig N50 1.2 Mbpscaffold N50 12.1 Mbp

total coverage: 213x Illumina HiSeq4000 + 75.4x PacBio Sequel

Siraitia grosvenorii(Monk fruit)CucurbitaceaeChinese medicine/sweetener456.5 Mbp30,565Anhui Agricultural University2018[84]
Hippophae rhamnoides (sea-buckthorn)Elaeagnaceaeused in food and cosmetics730 Mbp30,8122022[85]
Hevea brasiliensis (rubber tree) 2013[86]
Jatropha curcas Palawan bio-diesel crop 2011[87]
Manihot esculenta (Cassava) Humanitarian importance ~760 Mb 30,666JGI 2012[88]
Ricinus communis (Castor bean) Oilseed crop 320 Mbp 31,237JCVI 2010[89] Sanger coverage~4.6x contig N50 21.1 kbp scaffold N50 496.5kbp
Ricinus communis L. (Wild Castor) one of the most important oil crops worldwide ~318.13 Mb 30,066National Key R&D Program of China, the National Natural Science Foundation of China, the Guangdong Basic and Applied Basic Research Foundation, China, and the Shenzhen Science and Technology Program, China 2021[90] genome size of 316 Mb, a scaffold N50 of 31.93 Mb, and a contig N50 of 8.96 Mb
Ammopiptanthus nanusFabaceaeOnly genus of evergreen broadleaf shrub889 Mb37,1882018[91]
Cajanus cajan (Pigeon pea) var. Asha Model legume 2012[92] [93]
Arachis duranensis (A genome diploid wild peanut) accession V14167 Wild ancestor of peanut, an oilseed and grain legume crop 2016[94] Illumina 154x coverage, contig N50 22 kbp, scaffold N50 948 kbp
Amphicarpaea edgeworthii (Chinese hog-peanut) produces both aerial and subterranean fruits 299-Mb 27 899 Taishan Scholar Program, National Natural Science Foundation of China, the Innovation Program of SAAS 2021[95]
Arachis ipaensis (B genome diploid wild peanut) accession K30076FabaceaeWild ancestor of peanut, an oilseed and grain legume crop2016Illumina 163x coverage, contig N50 23 kbp, scaffold N50 5,343 kbp
Cicer arietinum (chickpea) filling 2013[96]
Cicer arietinum L. (chickpea) 2013[97]
Dalbergia odorifera (fragrant rosewood)FabaceaeWood product (heartwood) and folk medicine653 Mb30,31010Chinese Academy of Forestry2020[98] Contig N50: 5.92MbScaffold N50: 56.1 6Mb
Faidherbia albida(Apple-Ring Acacia)FabaceaeImportante in the Sahel for raising bees28,9792018[99]
Glycine max (soybean) var. Williams 82 Protein and oil crop 1115 Mbp46,4302010[100] Contig N50:189.4kbp

Scaffold N50:47.8Mbp

Sanger coverage ~8x

WGS

955.1 Mbp assembled

Lablab purpureus(Hyacinth Bean)FabaceaeCrop for human consumption20,9462018[101]
Lotus japonicus (Bird's-foot Trefoil) Model legume 2008[102]
Medicago truncatula (Barrel Medic) Model legume 2011[103]
Melilotus officinalis (sweet yellow clover)FabaceaeForage and Chinese medicine976.27 Mbp50,0222023[104]
Phaseolus vulgaris (common bean) Model bean 520 Mbp 31,638JGI 2013?[105]
Prosopis cineraria (Ghaf)FabaceaeDesert mimosoid legume691 Mbp55,3252023[106]
Vicia faba L. (Faba bean)FabaceaeNature (journal)2023[107]
Vicia villosa (hairy vetch)FabaceaeForage and cover crop2.03 Gbp2023[108]
Vigna hirtella (Wild vigna)FabaceaeWild legume474.1 Mbp2023[109]
Vigna reflexo-pilosa (Créole bean)FabaceaeTetraploid wild legume998.7 Mbp2023[110] [111]
Vigna subterranea(Bambara Groundnut)Fabaceaesimilar to peanuts31,7072018[112]
Vigna trinerviaFabaceae498,7 Mbp2023
Trifolium pratense L. (Red clover)Fabaceaeoften used to relieve symptoms of menopause, high cholesterol, and osteoporosis.[113] 2022[114]
Vicia sativa L. (Common vetch)Fabaceaegrain to livestock2022[115]
Macrotyloma uniflorum (Horse gram)Fabaceaehorsefeed2021[116]
Castanea mollissima (Chinese chestnut)Fagaceaecultivated nut785.53 Mb36,479 Beijing University of Agriculture2019[117] Illumina: ~42.7×PacBio: ~87×contig N50: 944,000bp
Quercus robur (European oak)FagaceaePedunculate oak, large diversity, somatic mutation studies736 Mb25,808 12Biogeco lab, Inrae, University of Bordeaux2018[118] https://www.oakgenome.fr/?page_id=587
Carya illinoinensisPecanJunglandaceaesnacks in various recipes651.31 Mb2019[119]
Juglans mandshurica Maxim. (Manchurian walnut)Junglandaceaecultivated nut548.7 Mb2022[120]
Juglans regia (Persian walnut)Junglandaceaecultivated nut540 MbChinese Academy of Forestry2020[121]
Juglans sigillata (Iron walnut)Junglandaceaecultivated nut536.50 MbNanjing Forestry University2020[122] Illumina+Nanopore+bionanoscaffold N50: 16.43 Mb, contig N50: 4.34 Mb
Linum usitatissimum (flax) Crop ~350 Mbp 43,384BGI et al. 2012[123]
Bombax ceiba

(red silk cotton tree)

Malvaceaecapsules with white fibre like cotton895 Mb2018[124]
Durio zibethinus (Durian) Tropical fruit tree ~738 Mbp 2017[125]
Gossypium raimondii One of the putative progenitor species of tetraploid cotton 2013?[126]
Theobroma cacao (cocoa tree) Flavouring crop 2010[127] [128]
Theobroma cacao (cocoa tree) cv. Matina 1-6 Most widely cultivated cacao type 2013[129]
Theobroma cacao (200 accessions)Malvaceaedomestication history of cacao2018[130]
Azadirachta indica (neem) Source of number of Terpenoids, including biopesticide azadirachtin, Used in Traditional Medicine 364 Mbp ~20000 GANIT Labs 2012[131] and 2011[132] Illumina GAIIx, scaffold N50 of 452028bp, Transcriptome data from Shoot, Root, Leaf, Flower and Seed
Artocarpus nanchuanensis (Bayberry)MoraceaeExtremely endangered fruit tree769.44 Mbp39,596282022[133]
Moringa oleifera(Horseradish Tree)Moringaceaetraditional herbal medicine18,4512018[134]
Eucalyptus grandis (Rose gum) Fibre and timber crop 691.43 Mb2011[135]
Eucalyptus pauciflora (Snow gum)MyrtaceaeFibre and timber crop594.87 MbANU2020[136] Nanopore + Illumina; contig N50: 3.23 Mb
Melaleuca alternifolia (tea tree) terpene-rich essential oil with therapeutic and cosmetic uses around the world 362 Mb 37,2262021[137] 3128 scaffolds with a total length of 362 Mb (N50 = 1.9 Mb)
Averrhoa carambola (Star Fruit)Oxalidalesfruit crop335.49 Mb2020[138]
C. cathayensis(Chinese hickory)Rosaceaefruit crop706.43 Mb2019
Eriobotrya japonica (Loquat)RosaceaeFruit tree760.1 Mb45,743Shanghai Academy of Agricultural Sciences2020[139] Illumina+Nanopore+Hi-C17 chromosomes, scaffold N50: 39.7 Mb
Fragaria vesca (wild strawberry) Fruit crop 240 Mbp34,8092011[140] scaffold N50: 1.3 Mbp

454/Illumina/solid

39x coverage

WGS

Gillenia trifoliata Apple Tribe 320.17±4.22 Mb 26,166 182021[141] Number of scaffolds(>2kb): 789, scaffold N50: 30,093,771 bp, Contig N50 (bp): 828,523
Malus domestica (apple) "Golden Delicious" Fruit crop ~742.3 Mbp57,3862010[142] contig N50 13.4 (kbp??)

scaffold N50 1,542.7 (kbp??)

total coverage ~16.9x (Sanger + 454)

71.2% anchored

Prunus amygdalus (almond) Fruit crop 2013?[143]
Prunus avium (sweet cherry) cv. Stella Fruit crop 2013?
Prunus mume (Chinese plum or Japanese apricot) Fruit crop 2012[144]
Prunus persica (peach) Fruit crop 265 Mbp27,8522013[145] Sanger coverage:8.47x

WGS

ca 99% ESTs mapped

215.9 Mbp in pseudomolecules

Prunus salicina (Japanese plum)RosaceaeFruit crop284.2 Mbp24,44882020[146] PacBio/Hi-C, with contig N50 of 1.78 Mb and scaffold N50 of 32.32 Mb.
Pyrus bretschneideri (ya pear or Chinese white pear) cv. Dangshansuli Fruit crop 2012[147]
Pyrus communis (European pear) cv. Doyenne du Comice Fruit crop 2013?
Rosa roxburghii (Chestnut Rose)RosaceaeFruit crop504 Mbp2023[148]
Rosa sterilisRosaceaeFruit crop981.2 Mb2023[149]
Rubus occidentalis(Black raspberry)RosaceaeFruit crop290 Mbp2018[150]
Citrus clementina (Clementine) Fruit crop 2013?[151]
Citrus sinensis (Sweet orange) Fruit crop 2013?, 2013[152]
Clausena lansium (Wampee)RutaceaeFruit crop2021[153]
Populus trichocarpa (poplar) Carbon sequestration, model tree, timber 510 Mbp (cytogenetic) 485 Mbp (coverage)73,013 [Phytozome]2006[154] Scaffold N50: 19.5 Mbp

Contig N50:552.8 Kbp [phytozome]

WGS

>=95 % cDNA found

Populus pruinosa(desert tree)Salicaceaefarming and ranching479.3 Mbp35,1312017[155]
Acer truncatum (purpleblow maple)SapindaceaeTree producing nervonic acid633.28 Mb28,4382020[156] contig N50 = 773.17 Kb; scaffold N50 = 46.36 Mb
Acer yangbienseSapindaceaePlant species with extremely small populations 110 Gb28,320132019[157] scaffold N50 = 45 Mb
Dimocarpus longan (Longan)SapindaceaeFruit crop471.88 Mb2017[158]
Xanthoceras sorbifolium Bunge (Yellowhorn)SapindaceaeFruit Crop504.2 Mb24,6722019[159] [160]
Aquilaria sinensis (Agarwood)ThymelaeaceaeFragrant wood726.5 Mb29,2032020[161] Illumina+nanopore+Hi-C, scaffold N50: 88.78 Mb
Vitis vinifera (grape) genotype PN40024 fruit crop 2007[162]
Organism strain Family Relevance Genome size Number of genes predicted Organization Year of completion Assembly status
Asclepias syriaca, (common milkweed)ApocynaceaeExudes milky latex420 Mbp14,474Oregon State University2019[163] 80.4× depthN50 = 3,415 bp
Erigeron breviscapus (Chinese herbal fleabane)AsteraceaeChinese medicine37,5052017[164]
Helianthus annuus (sunflower) Oil crop3.6 Gbb52,232INRA and The Sunflower Genome Database[165] 2017[166] N50 contig: 13.7 kb
Lactuca sativa (lettuce) Vegetable crop 2.5 Gbb38,9192017[167] N50 contig: 12 kb; N50 scaffold: 476 kb
Handroanthus impetiginosus, Bignoniaceae(Pink Ipê)BignoniaceaeCommon tree503.7 Mb31,6682017[168]
Diospyros oleifera Cheng (Oil persimmon)EbenaceaeFruit tree849.53 Mb28,580 Zhejiang University & Chinese Academy of Forestry2019[169] & 2020[170] Two genomes both chromosome scale & assigned to 15 pseudochromosomes
Salvia miltiorrhiza Bunge(Chinese red sage)LamiaceaeTCM treatment for COPD641 Mb34,5982015[171]
Callicarpa americana (American beautyberry)LamiaceaeOrnamental shrub and insect-repellent506 Mb32,164Michigan State University2020[172] 17 pseudomolecules Contig N50: 7.5Mb Scaffold N50: and 29.0 Mb
Mentha x piperita (Peppermint)LamiaceaeOil crop353 Mb35,597Oregon State University2017[173]
Tectona grandis(Teak)LamiaceaeDurability and water resistance31,1682019[174]
Utricularia gibba (humped bladderwort) model system for studying genome size evolution; a carnivorous plant 81.87 Mb28,494LANGEBIO, CINVESTAV2013[175] Scaffold N50: 80.839 Kb
Camptotheca acuminata Decne(Chinese happy tree)Nyssaceaechemical drugs for cancer treatment403 Mb31,8252017[176]
Davidia involucrata Baill (Dove tree)NyssaceaeLiving fossil1,169 Mb42,5542020[177]
Mimulus guttatus model system for studying ecological and evolutionary genetics ca 430 Mbp26,718JGI2013?[178] Scaffold N50 = 1.1 Mbp

Contig N50 = 45.5 Kbp

Primula vulgaris (Common primrose)PrimulaceaeUsed for cooking474 Mb2018[179]
Cinchona pubescens Vahl. (Fever tree)RubiaceaeAnti-malarial1.1 Gb2022[180]
Solanum lycopersicum (tomato) cv. Heinz 1706 Food crop ca 900 Mbp34,727SGN 2011[181] 2012[182] Sanger/454/Illumina/Solid

Pseudomolecules spanning 91 scaffolds (760Mbp of which 594Mbp have been oriented)

over 98% ESTs mappable

Solanum aethiopicum (Ethiopian eggplant) Food crop 1.02 Gbp34,906BGI2019[183] Illumina scaffold N50: 516,100bp

contig N50: 25,200 bp

~109× coverage

Solanum pimpinellifolium (Currant Tomato) closest wild relative to tomato 2012 Illumina

contig N50: 5100bp

~40x coverage

Solanum tuberosum (Potato) Food crop 726 Mbp[184] 39,031 Potato Genome Sequencing Consortium (PGSC) 2011[185] [186] Sanger/454/Illumina

79.2x coverage

contig N50: 31,429bp

scaffold N50: 1,318,511bp

Solanum commersonii (commerson's nightshade) Wild potato relative 838 Mbp kmer (840 Mbp) 37,662 UNINA, UMN, UNIVR, Sequentia Biotech, CGR 2015[187] Illumina

105x coverage

contig N50: 6,506bp

scaffold N50: 44,298bp

Cuscuta campestris(field dodder)Solanaceaemodel system for parasitic plants556 Mbp kmer (581 Mbp)44,303RWTH Aachen University, Research Center Jülich, University of Tromsø, Helmholtz Zentrum München, Technical University Munich, University of Vienna2018[188] scaffold N50 = 1.38 Mbp
Cuscuta australis (Southern dodder)Solanaceaemodel system for parasitic plants265 Mbpkmer (273 Mbp)19,671Kunming Institute of Botany, Chinese Academy of Sciences2018[189] scaffold N50 = 5.95 Mbpcontig N50 = 3.63 Mbp
Nicotiana benthamiana Close relative of tobacco ca 3 Gbp2012[190] Illumina

63x coverage

contig N50: 16,480bp

scaffold N50:89,778bp

>93% unigenes found

Nicotiana sylvestris (Tobacco plant) model system for studies of terpenoid production 2.636 GbpPhilip Morris International2013[191] 94x coverage

scaffold N50: 79.7 kbp

194kbp superscaffolds using physical Nicotiana map

Nicotiana tomentosiformis Tobacco progenitor 2.682 GbPhilip Morris International2013 146x coverage

scaffold N50: 82.6 kb

166kbp superscaffolds using physical Nicotiana map

Capsicum annuum (Pepper) (a) cv. CM334 (b) cv. Zunla-1Food crop~3.48 Gbp(a) 34,903 (b) 35,336(a) 2014[192] (b) 2014[193] N50 contig: (a) 30.0 kb (b) 55.4 kbN50 scaffold: (a) 2.47 Mb (b) 1.23 Mb
Capsicum annuum var. glabriusculum (Chiltepin) Progenitor of cultivated pepper~3.48 Gbp34,4762014 N50 contig: 52.2 kbN50 scaffold: 0.45 Mb
Petunia hybrida Economically important flower 2011[194]
Grasses
Organism strain Family Relevance Genome size Number of genes predicted Organization Year of completion Assembly status
Setaria italica (Foxtail millet) Model of C4 metabolism 2012[195]
Aegilops tauschii (Tausch's goatgrass) bread wheat D-genome progenitor ca 4.36 Gb39,622 2017[196] pseudomolecule assembly
Bothriochloa decipiens (Australian bluestem grass)PoaceaeBCD clade and polyploid1,218.22 Mb60,6522023[197] Scaffold N50: 42.637 Mb
Brachypodium distachyon (purple false brome) Model monocot 2010[198]
Coix lacryma-jobi L. (Job's tears)PoaceaeCrop & used in medicine & ornamentation1.619 Gb39,6292019[199]
Dichanthelium oligosanthes (Heller's rosette grass) C3 grass closely related to C4 species 960 Mb 2016[200]
Digitaria exilis (white fonio)PoaceaeAfrican orphan crop761 MbICRISAT, UC Davis2021[201] 3,329 contigs. N50: 1.73 Mb; L50, 126)
Eragrostis curvulaPoaceaegood for livestock602 Mb56,4692019[202]
Hordeum vulgare (barley) Model of ecological adoption IBSC 2012,[203] 2017[204]
Oryza brachyantha (wild rice) Disease resistant wild relative of rice 2013[205]
Oryza glaberrima (African rice) var CG14 West-African species of rice 2010[206]
Oryza rufipogon (red rice) 406 Mb 37,071 SIBS 2012[207] Illumina HiSeq2000 100x coverage
Oryza sativa (long grain rice) ssp indica Crop and model cereal 430 Mb[208] International Rice Genome Sequencing Project (IRGSP)2002[209]
Oryza sativa (Short grain rice) ssp japonica Crop and model cereal 430 MbInternational Rice Genome Sequencing Project (IRGSP)2002[210]
Panicum virgatum (switchgrass) biofuel 2013?[211]
Poa annua (annual bluegrass)Poaceaeweed3.56 Gb76,420USDA ARS, Forage and Range Research2023[212] unphased (haploid) pseudomolecules
Poa infirma (weak bluegrass)Poaceaediploid progenitor to Poa annua 2.25 Gb39,420Penn State University2023[213] unphased (haploid) pseudomolecules
Poa pratensis (Kentucky bluegrass)PoaceaeLawn grass6.09 Gbp2023[214] Scaffold N50: 65.1 Mbp
Poa supina (supine bluegrass)Poaceaediploid progenitor to Poa annua 1.27 Gb37,935Penn State University2023unphased (haploid) pseudomolecules
Phyllostachys edulis (moso bamboo) Bamboo textile industry603.3 Mb25,2252013[215] 2018[216]
Sorghum bicolor genotype BTx623 Crop ca 730 Mb34,4962009[217] contig N50:195.4kbp

scaffold N50: 62.4Mbp

Sanger, 8.5x coverage

WGS

Triticum aestivum (bread wheat) 20% of global nutrition 14.5 Gb 107,891 IWGSC 2018[218] pseudomolecule assembly
Triticum urartu Bread wheat A-genome progenitor ca 4.94 GbBGI2013[219] Non-repetitive sequence assembled

Illumina WGS

Zea mays (maize) ssp mays B73 Cereal crop 2.3 Gb 39,656[220] 2009[221] contig N50 40kbpscaffold N50: 76kbp

Sanger, 4-6x coverage per BAC

Pennisetum glaucum (pearl millet) Sub-Saharan and Sahelian millet species ~1,79 Gb 38,579 2017[222] WGS and bacterial artificial chromosome (BAC) sequencing
Other non-grasses
Organism strain Family Relevance Genome size Number of genes predicted No of chromosomesOrganization Year of completion Assembly status
Ananas bracteatus accession CB5BromeliaceaeWild pineapple relative382 Mbp27,024252015[223] 100× coverage using Illumina paired-end reads of libraries with different insert sizes.
Ananas comosus (L.) Merr. (Pineapple), varieties F153 and MD2BromeliaceaeThe most economically valuable crop possessing crassulacean acid metabolism (CAM)382 Mb27,024252015400× Illumina reads, 2× Moleculo synthetic long reads, 1× 454 reads, 5× PacBio single-molecule long reads and 9,400 BACs.
Musa acuminata (Banana) MusaceaeA-genome of modern banana cultivars523 Mbp36,5422012[224] N50 contig: 43.1 kbN50 scaffold: 1.3 Mb
Musa balbisiana (Wild banana) (PKW)MusaceaeB-genome of modern banana cultivars438 Mbp36,6382013[225] N50 contig: 7.9 kb
Musa balbisiana (DH-PKW)MusaceaeB-genome (B-subgenome to cultivated allotriploid bananas)430 Mb35,14811CATAS, BGI, CIRAD2019[226] N50 contig: 1.83 Mb
Musa beccarii (Red ornamental banana)MusaceaeOrnamental, aids understanding Musaceae genomes evolution567 Mb39,11292023[227]
Calamus simplicifolius
Arecaceaenative to tropical and subtropical regions1.98 Gb51,2352018[228]
Cocos nucifera (Coconut palm)Arecaceaeused in food and cosmetics~2.42 Gb2017[229]
Daemonorops jenkinsianaArecaceaenative to tropical and subtropical regions.1.61 Gb52,3422018
Phoenix dactylifera (Date palm)ArecaceaeWoody crop in arid regions658 Mbp28,8002011[230] N50 contig: 6.4 kb
Elaeis guineensis (African oil palm)ArecaceaeOil-bearing crop~1800 Mbp34,8002013[231] N50 scaffold: 1.27 Mb
Spirodela polyrhiza (Greater duckweed)AraceaeAquatic plant158 Mbp19,6232014[232] N50 scaffold: 3.76 Mb
Dendrobium hybrid cultivar ‘Emma White’OrchidaceaeCommercialised hybrid orchid678 Mbp2022[233]
Phalaenopsis equestris (Schauer) Rchb.f. (Moth orchid)OrchidaceaeBreeding parent of many modern moth orchid cultivars and hybrids.Plant with crassulacean acid metabolism (CAM).1600 Mbp29,4312014[234] N50 scaffold: 359,115 kb
Iris pallida Lam. (Dalmatian Iris)IridaceaeOrnamental and, commercial interest in secondary metabolites10.04 Gbp63,944Novartis2023[235] Scaffold N50: 14.34 Mbp
Iris sibirica (Siberian Ibis)IridaceaeOrnamental flower2023[236]
Iris virginica (Southern Blue Flag Iris)IridaceaeOrnamental flower2023

Press releases announcing sequencing

Not meeting criteria of the first paragraph of this article in being nearly full sequences with high quality, published, assembled and publicly available. This list includes species where sequences are announced in press releases or websites, but not in a data-rich publication in a refereed peer-review journal with DOI.

See also

External links

Notes and References

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