List of sequenced archaeal genomes explained

This list of sequenced archaeal genomes contains all the archaea known to have publicly available complete genome sequences that have been assembled, annotated and deposited in public databases. Methanococcus jannaschii was the first archaeon whose genome was sequenced, in 1996.[1]

Currently in this list there are 39 genomes belonging to Crenarchaeota species, 105 belonging to the Euryarchaeota, 1 genome belonging to Korarchaeota and to the Nanoarchaeota, 3 belonging to the Thaumarchaeota and 1 genome belonging to an unclassified Archaea, totalling 150 Archaeal genomes.

Crenarchaeota

Desulforococcales

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Aeropyrum pernixK11,669,6952,694[3] NC_000854 (NCBI Reference Sequence)1999
Desulfurococcus kamchatkensis1221n1,365,0001,521[4] CP0011402009
Hyperthermus butylicusDSM 54561,667,0001,669[5] CP0004932007
Ignicoccus hospitalisKIN4/I, DSM 183861,297,0001,496[6] CP0008162008
Ignisphaera aggregansAQ1.S1, DSM 172301,875,0002,042[7] CP0020982010
Pyrolobus fumarii1A, DSM 112041,843,0002,038[8] CP0028382011
Staphylothermus hellenicusP8, DSM 127101,580,0001,716[9] CP0020512011
Staphylothermus marinusF1, DSM 36391,570,0001,659[10] CP0005752011
Thermosphaera aggregansM11TL, DSM 114861,316,0001,457[11] CP0019392010

Sulfolobales

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Acidianus hospitalisW12,137,0002,424[12] CP0025352011
Metallosphaera cuprinaAr-41,840,0002,077[13] CP0026562011
Metallosphaera sedulaDSM 53482,191,0002,347[14] CP0006822008
Sulfolobus acidocaldariusDSM 6392,225,9592,223[15] CP0000772005
Sulfolobus islandicusHVE10/42,655,000[16] CP0024262011
Sulfolobus islandicusL.D.8.52,722,0002,996[17] Chromosome CP001731
Plasmid pLD8501 CP001732		2009
Sulfolobus islandicusL.S.2.152,736,0003,068CP0013992009
Sulfolobus islandicusM.14.252,608,0002,900CP0014002009
Sulfolobus islandicusM.16.272,692,0002,956CP0014012009
Sulfolobus islandicusM.16.42,586,0002,869CP0014022009
Sulfolobus islandicusREY15A2,522,000CP0024252011
Sulfolobus islandicusY.G.57.142,702,0003,079CP0014032009
Sulfolobus islandicusY.N.15.512,812,0003,318Chromosome CP001404
Plasmid pYN01 CP001405		2009
Sulfolobus islandicusLAL14/12,465,1772,601[18] CP0039282013
Sulfolobus solfataricusP22,992,2452,995[19] AE0066412001
Sulfolobus solfataricus98/22,668,0002,728DOE Joint Genome InstituteCP0018002009
Sulfolobus tokodaii72,694,7652,826[20] BA0000232001

Thermoproteales

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Caldivirga maquilingensisIC-1672,077,0002,011DOE Joint Genome InstituteCP0008522007
Pyrobaculum aerophilumIM22,222,4302,605[21] AE0094412002
Pyrobaculum arsenaticumPZ6, DSM 135142,121,0002,410 DOE Joint Genome InstituteCP0006602007
Pyrobaculum calidifontisJCM 115482,009,0002,213DOE Joint Genome InstituteCP0005612007
Pyrobaculum islandicumDSM 41841,826,0002,063DOE Joint Genome InstituteCP0005042006
Pyrobaculum sp. 1860Unpublished[22] CP0030982011
Thermofilum pendensHrk 51,781,0001,930[23] Chromosome CP000505
Plasmid pTPEN01 CP000506		2008
Thermoproteus neutrophilusV24Sta1,769,0002,053DOE Joint Genome InstituteCP0010142008
Thermoproteus tenaxKra11,841,0002,100[24] FN8698592011
Thermoproteus uzoniensis768-201,936,0002,229[25] CP0025902011
Vulcanisaeta distributaDSM 144292,374,0002,592[26] CP0021002010
Vulcanisaeta moutnovskia768-282,298,0002,393[27] CP0025292011

Euryarchaeota

Archaeoglobi

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Archaeoglobus fulgidusDSM43042,178,4002,407[28] AE0007821997
Archaeoglobus veneficusSNP6, DSM 111951,901,0002,194DOE Joint Genome InstituteCP0025882011
Archaeoglobus profundusAv18, DSM 56311,563,0001,911[29] Chromosome CP001857
Plasmid pArcpr01 CP001858		2010
Ferroglobus placidusAEDII12DO, DSM 106422,196,0002,622[30] CP0018992011

Halobacteria

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Halalkalicoccus jeotgaliB3, DSM 187963,690,0003925[31] Chromosome I CP002062
Plasmid 1 CP002063
Plasmid 2 CP002064
Plasmid 3 CP002065
Plasmid 4 CP002066
Plasmid 5 CP002067
Plasmid 6 CP002068		2010
Haloarcula hispanicaCGMCC 1.20493,484,0003,561[32] Chromosome I CP002921
Chromosome II CP002922
Plasmid pHH400 CP002923		2011
Haloarcula marismortuiATCC 430493,131,7243,131[33] Chromosome I AY596297
Chromosome II AY596298
Plasmid pNG100 AY596290
Plasmid pNG200 AY596291
Plasmid pNG300 AY596292
Plasmid pNG400 AY596293
Plasmid pNG500 AY596294
Plasmid pNG600 AY596295
Plasmid pNG700 AY596296		2004
Halobacterium salinarumR1, DSM 6712,000,0002,801 [34] Chromosome NC_010364
Plasmid PHS1 NC_010366
Plasmid PHS2 NC_010369
Plasmid PHS3 NC_010368
Plasmid PHS4 NC_010367		2008
Halobacterium speciesNRC-12,014,2392,058[35] Chromosome NC_002607
Plasmid pNRC100 NC_002607
Plasmid pNRC200 NC_002608		2000
Halobiforma lacisalsiAJ5, JCM 129834,320,0004,682[36] AGFZ000000002011
Haloferax volcaniiDS2[37] Chromosome CP001956
Plasmid pHV1 CP001957
Plasmid pHV2 CP001954
Plasmid pHV3 CP001953
Plasmid pHV4 CP001955		2010
Halogeometricum borinquensePR3, DSM 115513,920,0004,059[38] Chromosome CP001690
Plasmid pHBOR01 CP001691
Plasmid pHBOR02 CP001692
Plasmid pHBOR03 CP001693
Plasmid pHBOR04 CP001694
Plasmid pHBOR05 CP001695		2009
Halomicrobium mukohataeiarg-2, DSM 122863,332,0003,475[39] Chromosome CP001688
Plasmid pHmuk01 CP001689		2009
Halopiger xanaduensisSH-63,668,0003,685DOE Joint Genome InstituteChromosome CP002839
Plasmid pHALXA01 CP002840
Plasmid pHALXA02 CP002841
Plasmid pHALXA03 CP002842		2011 (Chromosome)
Haloquadratum walsbyiC23, DSM 168543,148,000[40] Chromosome FR746099
Plasmid PL6A FR746101
Plasmid PL6B FR746102
Plasmid PL100 FR746100		2011
Haloquadratum walsbyiHBSQ001, DSM 167903,132,0002,914[41] Chromosome AM180088
Plasmid PL47 AM180089		2006
Halorhabdus tiamateaSARL4B3,840,0004,034[42] AFNT000000002011
Halorhabdus utahensisAX-2, DSM 129403116 Kb3076[43] CP0016872009
Halorubrum lacusprofundiATCC 492394,300,0003,725DOE Joint Genome InstituteChromosome 1 CP001365
Chromosome 2 CP001366
Plasmid pHLAC01 CP001367		2009 (Chromosomes 1 and 2)
Haloterrigena turkmenicaVKM B-1734, DSM 55115,440,0005,351[44] Chromosome CP001860
Plasmid pHTUR01 CP001861
Plasmid pHTUR02 CP001862
Plasmid pHTUR03 CP001863
Plasmid pHTUR04 CP001864
Plasmid pHTUR05 CP001865
Plasmid pHTUR06 CP001866		2010
Natrialba asiaticaATCC 700177[45] Survey2004
Natrialba magadiiATCC 430993,751,0004,364DOE Joint Genome InstituteCP0019322010
Natronomonas pharaonisDSM21602,595,2212,675[46] Chromosome CR936257
Plasmid PL131 CR936258
Plasmid PL23 CR936259		2005

Methanobacteria

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Methanobacterium sp. AL-212,583,000DOE Joint Genome Institute,
Univ of Illinois at Urbana-Champaign		CP0025512011
Methanobacterium sp. SWAN-12,546,0002,500DOE Joint Genome Institute,
Univ Illinois at Urbana-Champaign		CP0027722011
Methanobacterium thermoautotrophicumdelta-H1,751,3771,869[47] AE0006661997
Methanobrevibacter ruminantiumM12,937,0002,283[48] CP0017192010
Methanobrevibacter smithiiDSM 23751,704,0001,748Washington UniversityABYW000000002008
Methanobrevibacter smithiiF1, DSM 23741,707,0001,749Washington UniversityABYV000000002010
Methanobrevibacter smithiiPS, ATCC 350611,853,0001,841[49] CP0006782007
Methanobrevibacter smithiiTS94A1,889,0001,808[50] AELU000000002011
Methanobrevibacter smithiiTS94B1,886,0001,856AELV000000002011
Methanobrevibacter smithiiTS94C1,910,0001,812AELW000000002011
Methanobrevibacter smithiiTS95A1,992,0001,961AELX000000002011
Methanobrevibacter smithiiTS95B1,972,0001,895AELY000000002011
Methanobrevibacter smithiiTS95C1,978,0001,874AELZ000000002011
Methanobrevibacter smithiiTS95D2,011,0001,860AEMA000000002011
Methanobrevibacter smithiiTS96A1,975,0001,852AEMB000000002011
Methanobrevibacter smithiiTS96B1,869,0001,742AEMC000000002011
Methanobrevibacter smithiiTS96C1,818,0001,764AEMD000000002011
Methanobrevibacter smithiiTS145A1,782,0001,786AEKU000000002011
Methanobrevibacter smithiiTS145B1,797,0001,880AELL000000002011
Methanobrevibacter smithiiTS146A1,792,0001,823AELM000000002011
Methanobrevibacter smithiiTS146B1,794,0001,814 AELN000000002011
Methanobrevibacter smithiiTS146C1,947,0002,355AELO000000002011
Methanobrevibacter smithiiTS146D1,713,0001,693AELP000000002011
Methanobrevibacter smithiiTS146E1,952,0001,887AELQ000000002011
Methanobrevibacter smithiiTS147A2,008,0001,969AELR000000002011
Methanobrevibacter smithiiTS147B1,965,0001,911AELS000000002011
Methanobrevibacter smithiiTS147C1,973,0002,014AELT000000002011
Methanosphaera stadtmanaeDSM 30911,767,4031,534[51] CP0001022005
Methanothermobacter marburgensisMarburg DSM 21331,634,0001,806[52] CP0017102010
Methanothermus fervidusV24S, DSM 20881,243,0001,361[53] CP0022782010

Methanococci

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Methanocaldococcus fervensAG861,485,0001,663DOE Joint Genome InstituteChromosome CP001696
Plasmid pMEFER01 CP001697		2009 (Chromosome)
Methanocaldococcus infernusME1,328,0001,513DOE Joint Genome InstituteCP0020092010
Methanocaldococcus jannaschiiDSM 26611,664,9701,715[54] Chromosome: L77117
Large plasmid: L77118
Small plasmid: L77119		1996
Methanocaldococcus vulcaniusM7, DSM 120941,746,0001,808DOE Joint Genome InstituteChromosome CP001787
Plasmid pMETVU01 CP001788
Plasmid pMETVU02 CP001789		2009
Methanocaldococcus sp. FS406-221,760,0001,893DOE Joint Genome InstituteChromosome CP001901
Plasmid pFS01 CP001902		2010 (Chromosome)
Methanococcus aeolicusNankai-31,569,0001,554DOE Joint Genome InstituteCP0007432007
Methanococcus maripaludisC51,780,0001,896DOE Joint Genome InstituteCP0006092007
Methanococcus maripaludisC61,744,0001,874DOE Joint Genome InstituteCP0008672007
Methanococcus maripaludisC71,772,0001,858DOE Joint Genome InstituteCP0007452007
Methanococcus maripaludisS21,661,1371,722[55] NC_005791 (NCBI Reference Sequence)2004
Methanococcus maripaludisX11,746,0001,892[56] CP0029132011
Methanococcus vannieliiSB1,720,0001,755DOE Joint Genome InstituteCP0007422007
Methanococcus voltaeA31,936,0001,768DOE Joint Genome InstituteCP0020572010
Methanothermococcus okinawensisIH11,662,0001,662DOE Joint Genome InstituteChromosome CP002792
Plasmid pMETOK01 CP002793		2011 (Chromosome)
Methanotorris igneusKol5, DSM 56661,854,0001,843DOE Joint Genome InstituteCP0027372011

Methanomicrobia

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Candidatus Methanoregula boonei6A82,542,0002,518DOE Joint Genome Institute[57] CP0007802007
Methanocella sp. Rice Cluster I (RC-I)MRE503,179,9163103Genome sequence,[58] then taxonomic placement[59] AM1141932005
Methanocella paludicolaSANAE2,957,6353004[60] AP0115322011
Methanocella conradiiHZ2541,316,3802512[61] CP0032432012
Methanococcoides burtoniiDSM62422,575,0322,273[62] CP0003002009
Methanocorpusculum labreanumZ1,804,0001,830[63] CP0005592009
Methanoculleus marisnigriJR1, DSM 14982,478,0002,560[64] CP0005622009
Methanohalobium evestigatumZ-73032,406,2322,254DOE Joint Genome Institute[65] Chromosome: CP002069
Plasmid pMETEV01: CP002070		2010 (Chromosome)
Methanohalophilus mahiiSLP, DSM 52192,012,0002,095[66] CP0019942010
Methanoplanus petroleariusSEBR 4847, DSM 115712,843,0002,881[67] CP0021172011
Methanosalsum zhilinaeWeN5, DSM 40172,138,0002,086CP0021012010
Methanosaeta conciliiGP-63,008,000[68] CP0025652010
Methanosaeta harundinacea6Ac2,559,000CP0031172011
Methanosaeta thermophilaPT1,879,0001,785DOE Joint Genome InstituteCP0004772006
Methanosarcina acetivoransC2A5,751,4924,540[69] AE0102992002
Methanosarcina barkeriFusaro, DSM 8044,837,4083,607[70] Chromosome CP000099
Plasmid 1 CP000098		2006 (Chromosome)
Methanosarcina mazeiGo14,096,3453,371[71] AE0083842002
Methanosphaerula palustrisE1-9c, DSM 199582,922,0002,859DOE Joint Genome InstituteCP0013382008
Methanospirillum hungateiJF-13,544,7383,139DOE Joint Genome InstituteCP0002542006

Thermococci

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Pyrococcus abyssiGE51,765,1181,784[73] NC_000868 (NCBI Reference Sequence)2000
Pyrococcus furiosusDSM 36381,908,2562,065[74] AE0099501999
Pyrococcus horikoshiiOT31,738,5052,061[75] NC_000961 (NCBI Reference Sequence)1998
Pyrococcus sp. NA21,861,0001,984CP0026702011
Pyrococcus yayanosiiCH11,716,0001,952[76] CP0027792011
Thermococcus barophilusMP, DSM 118362,010,0002,196[77] CP0023722011
Thermococcus gammatoleransEJ32,045,0002,206[78] CP0013982009
Thermococcus kodakaraensisKOD12,088,7372,306[79] AP0068782005
Thermococcus onnurineusNA11,847,0002,027[80] NC_011529 (NCBI Reference Sequence)2008
Thermococcus sibiricusMM 7391,845,0002,085[81] CP0014632009
Thermococcus sp. 45572,011,0002,181[82] CP0029202011
Thermococcus sp. AM42,086,0002,279[83] CP0029522011

Thermoplasmata

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Ferroplasma acidarmanusFer11,865,0001,742[84] AABC000000002007
Picrophilus torridusDSM 97901,545,8951,535[85] AE0172612004
Thermoplasma acidophilumDSM 17281,564,9061,478[86] NC_002578 (NCBI Reference Sequence)2000
Thermoplasma volcaniumGSS11,584,8041,526[87] NC_002689 (NCBI Reference Sequence)2000

Unclassified Euryarchaeota

Thaumarchaeota

Nitrosopumilales

SpeciesStrainBase PairsGenesReferenceGenBank identifierPublication year
Candidatus Nitrosoarchaeum limniaSFB11,769,0002,171[91] AEGP000000002011
Nitrosopumilus maritimusSCM11,645,0001,842[92] CP0008662010

See also

External links

Notes and References

  1. Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD, Kerlavage AR, Dougherty BA, Tomb JF, Adams MD, Reich CI, Overbeek R, Kirkness EF, Weinstock KG, Merrick JM, Glodek A, Scott JL, Geoghagen NS, Venter JC . 6 . Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii . Science . 273 . 5278 . 1058–73 . August 1996 . 8688087 . 10.1126/science.273.5278.1058 . 1996Sci...273.1058B . 41481616 .
  2. Mardanov AV, Svetlitchnyi VA, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG . The genome sequence of the crenarchaeon Acidilobus saccharovorans supports a new order, Acidilobales, and suggests an important ecological role in terrestrial acidic hot springs . Applied and Environmental Microbiology . 76 . 16 . 5652–7 . August 2010 . 20581186 . 2918975 . 10.1128/AEM.00599-10 . 2010ApEnM..76.5652M .
  3. Kawarabayasi Y, Hino Y, Horikawa H, Yamazaki S, Haikawa Y, Jin-no K, Takahashi M, Sekine M, Baba S, Ankai A, Kosugi H, Hosoyama A, Fukui S, Nagai Y, Nishijima K, Nakazawa H, Takamiya M, Masuda S, Funahashi T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Kikuchi H . 6 . Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1 . DNA Research . 6 . 2 . 83–101, 145-52 . April 1999 . 10382966 . 10.1093/dnares/6.2.83 . free .
  4. Ravin NV, Mardanov AV, Beletsky AV, Kublanov IV, Kolganova TV, Lebedinsky AV, Chernyh NA, Bonch-Osmolovskaya EA, Skryabin KG . 6 . Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis . Journal of Bacteriology . 191 . 7 . 2371–9 . April 2009 . 19114480 . 2655497 . 10.1128/JB.01525-08 .
  5. Brügger K, Chen L, Stark M, Zibat A, Redder P, Ruepp A, Awayez M, She Q, Garrett RA, Klenk HP . 6 . The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C . Archaea . 2 . 2 . 127–35 . May 2007 . 17350933 . 2686385 . 10.1155/2007/745987 . free .
  6. Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, Fernandes F, Szeto E, Lapidus A, Kyrpides NC, Saier MH, Richardson PM, Rachel R, Huber H, Eisen JA, Koonin EV, Keller M, Stetter KO . 6 . A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans . Genome Biology . 9 . 11 . R158 . 2008 . 19000309 . 2614490 . 10.1186/gb-2008-9-11-r158 . free .
  7. Göker M, Held B, Lapidus A, Nolan M, Spring S, Yasawong M, Lucas S, Glavina Del Rio T, Tice H, Cheng JF, Goodwin L, Tapia R, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Brambilla E, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Detter JC, Han C, Rohde M, Sikorski J, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP . 6 . Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1) . Standards in Genomic Sciences . 3 . 1 . 66–75 . August 2010 . 21304693 . 3035270 . 10.4056/sigs.1072907 .
  8. Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I, Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Huber H, Yasawong M, Rohde M, Spring S, Abt B, Sikorski J, Wirth R, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A . 6 . Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A) . Standards in Genomic Sciences . 4 . 3 . 381–92 . July 2011 . 21886865 . 3156397 . 10.4056/sigs.2014648 .
  9. Anderson I, Wirth R, Lucas S, Copeland A, Lapidus A, Cheng JF, Goodwin L, Pitluck S, Davenport K, Detter JC, Han C, Tapia R, Land M, Hauser L, Pati A, Mikhailova N, Woyke T, Klenk HP, Kyrpides N, Ivanova N . 6 . Complete genome sequence of Staphylothermus hellenicus P8 . Standards in Genomic Sciences . 5 . 1 . 12–20 . October 2011 . 22180806 . 3236042 . 10.4056/sigs.2054696 .
  10. Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, Elkins JG, Mavromatis K, Sun H, Land M, Lapidus A, Lucas S, Barry K, Huber H, Zhulin IB, Whitman WB, Mukhopadhyay B, Woese C, Bristow J, Kyrpides N . 6 . The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota . BMC Genomics . 10 . 145 . April 2009 . 19341479 . 2678158 . 10.1186/1471-2164-10-145 . free .
  11. Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CC, Brettin T, Detter JC, Tapia R, Han C, Heimerl T, Weikl F, Brambilla E, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP . 6 . Complete genome sequence of Thermosphaera aggregans type strain (M11TL) . Standards in Genomic Sciences . 2 . 3 . 245–59 . June 2010 . 21304709 . 3035292 . 10.4056/sigs.821804 .
  12. You XY, Liu C, Wang SY, Jiang CY, Shah SA, Prangishvili D, She Q, Liu SJ, Garrett RA . 6 . Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles . Extremophiles . 15 . 4 . 487–97 . July 2011 . 21607549 . 3119797 . 10.1007/s00792-011-0379-y .
  13. Liu LJ, You XY, Zheng H, Wang S, Jiang CY, Liu SJ . Complete genome sequence of Metallosphaera cuprina, a metal sulfide-oxidizing archaeon from a hot spring . Journal of Bacteriology . 193 . 13 . 3387–8 . July 2011 . 21551305 . 3133273 . 10.1128/JB.05038-11 .
  14. Auernik KS, Maezato Y, Blum PH, Kelly RM . The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism . Applied and Environmental Microbiology . 74 . 3 . 682–92 . February 2008 . 18083856 . 2227735 . 10.1128/AEM.02019-07 . 2008ApEnM..74..682A .
  15. Chen L, Brügger K, Skovgaard M, Redder P, She Q, Torarinsson E, Greve B, Awayez M, Zibat A, Klenk HP, Garrett RA . 6 . The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota . Journal of Bacteriology . 187 . 14 . 4992–9 . July 2005 . 15995215 . 1169522 . 10.1128/JB.187.14.4992-4999.2005 .
  16. Guo L, Brügger K, Liu C, Shah SA, Zheng H, Zhu Y, Wang S, Lillestøl RK, Chen L, Frank J, Prangishvili D, Paulin L, She Q, Huang L, Garrett RA . 6 . Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies . Journal of Bacteriology . 193 . 7 . 1672–80 . April 2011 . 21278296 . 3067641 . 10.1128/JB.01487-10 .
  17. Reno ML, Held NL, Fields CJ, Burke PV, Whitaker RJ . Biogeography of the Sulfolobus islandicus pan-genome . Proceedings of the National Academy of Sciences of the United States of America . 106 . 21 . 8605–10 . May 2009 . 19435847 . 2689034 . 10.1073/pnas.0808945106 . 2009PNAS..106.8605R . free .
  18. Jaubert C, Danioux C, Oberto J, Cortez D, Bize A, Krupovic M, She Q, Forterre P, Prangishvili D, Sezonov G . 6 . Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon . Open Biology . 3 . 4 . 130010 . April 2013 . 23594878 . 3718332 . 10.1098/rsob.130010 .
  19. She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ, Chan-Weiher CC, Clausen IG, Curtis BA, De Moors A, Erauso G, Fletcher C, Gordon PM, Heikamp-de Jong I, Jeffries AC, Kozera CJ, Medina N, Peng X, Thi-Ngoc HP, Redder P, Schenk ME, Theriault C, Tolstrup N, Charlebois RL, Doolittle WF, Duguet M, Gaasterland T, Garrett RA, Ragan MA, Sensen CW, Van der Oost J . 6 . The complete genome of the crenarchaeon Sulfolobus solfataricus P2 . Proceedings of the National Academy of Sciences of the United States of America . 98 . 14 . 7835–40 . July 2001 . 11427726 . 35428 . 10.1073/pnas.141222098 . 2001PNAS...98.7835S . free .
  20. Kawarabayasi Y, Hino Y, Horikawa H, Jin-no K, Takahashi M, Sekine M, Baba S, Ankai A, Kosugi H, Hosoyama A, Fukui S, Nagai Y, Nishijima K, Otsuka R, Nakazawa H, Takamiya M, Kato Y, Yoshizawa T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Aoki K, Masuda S, Yanagii M, Nishimura M, Yamagishi A, Oshima T, Kikuchi H . 6 . Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7 . DNA Research . 8 . 4 . 123–40 . August 2001 . 11572479 . 10.1093/dnares/8.4.123 . free .
  21. Fitz-Gibbon ST, Ladner H, Kim UJ, Stetter KO, Simon MI, Miller JH . Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum . Proceedings of the National Academy of Sciences of the United States of America . 99 . 2 . 984–9 . January 2002 . 11792869 . 117417 . 10.1073/pnas.241636498 . 2002PNAS...99..984F . free .
  22. Web site: GOLD.
  23. Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich LE, Elkins JG, Mavromatis K, Lykidis A, Kim E, Thompson LS, Nolan M, Land M, Copeland A, Lapidus A, Lucas S, Detter C, Zhulin IB, Olsen GJ, Whitman W, Mukhopadhyay B, Bristow J, Kyrpides N . 6 . Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction . Journal of Bacteriology . 190 . 8 . 2957–65 . April 2008 . 18263724 . 2293246 . 10.1128/JB.01949-07 .
  24. Siebers B, Zaparty M, Raddatz G, Tjaden B, Albers SV, Bell SD, Blombach F, Kletzin A, Kyrpides N, Lanz C, Plagens A, Rampp M, Rosinus A, von Jan M, Makarova KS, Klenk HP, Schuster SC, Hensel R . 6 . The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota . PLOS ONE . 6 . 10 . e24222 . 2011 . 22003381 . 3189178 . 10.1371/journal.pone.0024222 . 2011PLoSO...624222S . free .
  25. Mardanov AV, Gumerov VM, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG . Complete genome sequence of the thermoacidophilic crenarchaeon Thermoproteus uzoniensis 768-20 . Journal of Bacteriology . 193 . 12 . 3156–7 . June 2011 . 21478349 . 3133184 . 10.1128/JB.00409-11 .
  26. Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S, Nolan M, Glavina Del Rio T, Cheng JF, Bruce D, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Göker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC . 6 . Complete genome sequence of Vulcanisaeta distributa type strain (IC-017) . Standards in Genomic Sciences . 3 . 2 . 117–25 . September 2010 . 21304741 . 3035369 . 10.4056/sigs.1113067 .
  27. Gumerov VM, Mardanov AV, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG . Complete genome sequence of "Vulcanisaeta moutnovskia" strain 768-28, a novel member of the hyperthermophilic crenarchaeal genus Vulcanisaeta . Journal of Bacteriology . 193 . 9 . 2355–6 . May 2011 . 21398550 . 3133093 . 10.1128/JB.00237-11 .
  28. Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, Quackenbush J, Lee NH, Sutton GG, Gill S, Kirkness EF, Dougherty BA, McKenney K, Adams MD, Loftus B, Peterson S, Reich CI, McNeil LK, Badger JH, Glodek A, Zhou L, Overbeek R, Gocayne JD, Weidman JF, McDonald L, Utterback T, Cotton MD, Spriggs T, Artiach P, Kaine BP, Sykes SM, Sadow PW, D'Andrea KP, Bowman C, Fujii C, Garland SA, Mason TM, Olsen GJ, Fraser CM, Smith HO, Woese CR, Venter JC . 6 . The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus . Nature . 390 . 6658 . 364–70 . November 1997 . 9389475 . 10.1038/37052 . 1997Natur.390..364K . free .
  29. von Jan M, Lapidus A, Del Rio TG, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Goodwin L, Han C, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Ovchinnikova G, Chertkov O, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Saunders E, Brettin T, Detter JC, Chain P, Eichinger K, Huber H, Spring S, Rohde M, Göker M, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP . 6 . Complete genome sequence of Archaeoglobus profundus type strain (AV18) . Standards in Genomic Sciences . 2 . 3 . 327–46 . June 2010 . 21304717 . 3035285 . 10.4056/sigs.942153 .
  30. Anderson I, Risso C, Holmes D, Lucas S, Copeland A, Lapidus A, Cheng JF, Bruce D, Goodwin L, Pitluck S, Saunders E, Brettin T, Detter JC, Han C, Tapia R, Larimer F, Land M, Hauser L, Woyke T, Lovley D, Kyrpides N, Ivanova N . 6 . Complete genome sequence of Ferroglobus placidus AEDII12DO . Standards in Genomic Sciences . 5 . 1 . 50–60 . October 2011 . 22180810 . 3236036 . 10.4056/sigs.2225018 .
  31. Roh SW, Nam YD, Nam SH, Choi SH, Park HS, Bae JW . Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon . Journal of Bacteriology . 192 . 17 . 4528–9 . September 2010 . 20601480 . 2937367 . 10.1128/JB.00663-10 .
  32. Liu H, Wu Z, Li M, Zhang F, Zheng H, Han J, Liu J, Zhou J, Wang S, Xiang H . 6 . Complete genome sequence of Haloarcula hispanica, a Model Haloarchaeon for studying genetics, metabolism, and virus-host interaction . Journal of Bacteriology . 193 . 21 . 6086–7 . November 2011 . 21994921 . 3194904 . 10.1128/JB.05953-11 .
  33. Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV . 6 . Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea . Genome Research . 14 . 11 . 2221–34 . November 2004 . 15520287 . 525680 . 10.1101/gr.2700304 .
  34. Pfeiffer F, Schuster SC, Broicher A, Falb M, Palm P, Rodewald K, Ruepp A, Soppa J, Tittor J, Oesterhelt D . 6 . Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1 . Genomics . 91 . 4 . 335–46 . April 2008 . 18313895 . 10.1016/j.ygeno.2008.01.001 . free .
  35. Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, Goo YA, Leithauser B, Keller K, Cruz R, Danson MJ, Hough DW, Maddocks DG, Jablonski PE, Krebs MP, Angevine CM, Dale H, Isenbarger TA, Peck RF, Pohlschroder M, Spudich JL, Jung KW, Alam M, Freitas T, Hou S, Daniels CJ, Dennis PP, Omer AD, Ebhardt H, Lowe TM, Liang P, Riley M, Hood L, DasSarma S . 6 . Genome sequence of Halobacterium species NRC-1 . Proceedings of the National Academy of Sciences of the United States of America . 97 . 22 . 12176–81 . October 2000 . 11016950 . 17314 . 10.1073/pnas.190337797 . 2000PNAS...9712176N . free .
  36. Jiang X, Wang S, Cheng H, Huo Y, Zhang X, Zhu X, Han X, Ni P, Wu M . 6 . Genome sequence of Halobiforma lacisalsi AJ5, an extremely halophilic archaeon which harbors a bop gene . Journal of Bacteriology . 193 . 24 . 7023–4 . December 2011 . 22123770 . 3232858 . 10.1128/JB.06282-11 .
  37. Hartman AL, Norais C, Badger JH, Delmas S, Haldenby S, Madupu R, Robinson J, Khouri H, Ren Q, Lowe TM, Maupin-Furlow J, Pohlschroder M, Daniels C, Pfeiffer F, Allers T, Eisen JA . 6 . The complete genome sequence of Haloferax volcanii DS2, a model archaeon . PLOS ONE . 5 . 3 . e9605 . March 2010 . 20333302 . 2841640 . 10.1371/journal.pone.0009605 . Friedberg . 2010PLoSO...5.9605H . Iddo . free .
  38. Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Anderson I, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, D'haeseleer P, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Chain P . 6 . Complete genome sequence of Halogeometricum borinquense type strain (PR3) . Standards in Genomic Sciences . 1 . 2 . 150–9 . September 2009 . 21304651 . 3035229 . 10.4056/sigs.23264 .
  39. Tindall BJ, Schneider S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Saunders E, Bruce D, Goodwin L, Pitluck S, Mikhailova N, Pati A, Ivanova N, Mavrommatis K, Chen A, Palaniappan K, Chain P, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Han C, Rohde M, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC, Detter JC . 6 . Complete genome sequence of Halomicrobium mukohataei type strain (arg-2) . Standards in Genomic Sciences . 1 . 3 . 270–7 . November 2009 . 21304667 . 3035239 . 10.4056/sigs.42644 .
  40. Dyall-Smith ML, Pfeiffer F, Klee K, Palm P, Gross K, Schuster SC, Rampp M, Oesterhelt D . 6 . Haloquadratum walsbyi: limited diversity in a global pond . PLOS ONE . 6 . 6 . e20968 . 2011 . 21701686 . 3119063 . 10.1371/journal.pone.0020968 . 2011PLoSO...620968D . free .
  41. Bolhuis H, Palm P, Wende A, Falb M, Rampp M, Rodriguez-Valera F, Pfeiffer F, Oesterhelt D . 6 . The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity . BMC Genomics . 7 . 169 . July 2006 . 16820047 . 1544339 . 10.1186/1471-2164-7-169 . free .
  42. Antunes A, Alam I, Bajic VB, Stingl U . Genome sequence of Halorhabdus tiamatea, the first archaeon isolated from a deep-sea anoxic brine lake . Journal of Bacteriology . 193 . 17 . 4553–4 . September 2011 . 21705593 . 3165509 . 10.1128/JB.05462-11 .
  43. Anderson I, Tindall BJ, Pomrenke H, Göker M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Chen F, Tice H, Cheng JF, Lucas S, Chertkov O, Bruce D, Brettin T, Detter JC, Han C, Goodwin L, Land M, Hauser L, Chang YJ, Jeffries CD, Pitluck S, Pati A, Mavromatis K, Ivanova N, Ovchinnikova G, Chen A, Palaniappan K, Chain P, Rohde M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP . 6 . Complete genome sequence of Halorhabdus utahensis type strain (AX-2) . Standards in Genomic Sciences . 1 . 3 . 218–25 . November 2009 . 21304660 . 3035240 . 10.4056/sigs.31864 .
  44. Saunders E, Tindall BJ, Fähnrich R, Lapidus A, Copeland A, Del Rio TG, Lucas S, Chen F, Tice H, Cheng JF, Han C, Detter JC, Bruce D, Goodwin L, Chain P, Pitluck S, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brettin T, Rohde M, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC . 6 . Complete genome sequence of Haloterrigena turkmenica type strain (4k) . Standards in Genomic Sciences . 2 . 1 . 107–16 . February 2010 . 21304683 . 3035258 . 10.4056/sigs.681272 .
  45. Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L . 6 . Low-pass sequencing for microbial comparative genomics . BMC Genomics . 5 . 1 . 3 . January 2004 . 14718067 . 331400 . 10.1186/1471-2164-5-3 . free .
  46. Falb M, Pfeiffer F, Palm P, Rodewald K, Hickmann V, Tittor J, Oesterhelt D . Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis . Genome Research . 15 . 10 . 1336–43 . October 2005 . 16169924 . 1240075 . 10.1101/gr.3952905 .
  47. Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, Harrison D, Hoang L, Keagle P, Lumm W, Pothier B, Qiu D, Spadafora R, Vicaire R, Wang Y, Wierzbowski J, Gibson R, Jiwani N, Caruso A, Bush D, Reeve JN . 6 . Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics . Journal of Bacteriology . 179 . 22 . 7135–55 . November 1997 . 9371463 . 179657 . 10.1128/jb.179.22.7135-7155.1997 .
  48. Leahy SC, Kelly WJ, Altermann E, Ronimus RS, Yeoman CJ, Pacheco DM, Li D, Kong Z, McTavish S, Sang C, Lambie SC, Janssen PH, Dey D, Attwood GT . 6 . The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions . PLOS ONE . 5 . 1 . e8926 . January 2010 . 20126622 . 2812497 . 10.1371/journal.pone.0008926 . 2010PLoSO...5.8926L . free .
  49. Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, Latreille P, Kim K, Wilson RK, Gordon JI . 6 . Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut . Proceedings of the National Academy of Sciences of the United States of America . 104 . 25 . 10643–8 . June 2007 . 17563350 . 1890564 . 10.1073/pnas.0704189104 . 2007PNAS..10410643S . free .
  50. Hansen EE, Lozupone CA, Rey FE, Wu M, Guruge JL, Narra A, Goodfellow J, Zaneveld JR, McDonald DT, Goodrich JA, Heath AC, Knight R, Gordon JI . 6 . Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins . Proceedings of the National Academy of Sciences of the United States of America . 108 . Suppl 1 . 4599–606 . March 2011 . 21317366 . 3063581 . 10.1073/pnas.1000071108 . 2011PNAS..108.4599H . free .
  51. Fricke WF, Seedorf H, Henne A, Krüer M, Liesegang H, Hedderich R, Gottschalk G, Thauer RK . 6 . The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis . Journal of Bacteriology . 188 . 2 . 642–58 . January 2006 . 16385054 . 1347301 . 10.1128/JB.188.2.642-658.2006 .
  52. Liesegang H, Kaster AK, Wiezer A, Goenrich M, Wollherr A, Seedorf H, Gottschalk G, Thauer RK . 6 . Complete genome sequence of Methanothermobacter marburgensis, a methanoarchaeon model organism . Journal of Bacteriology . 192 . 21 . 5850–1 . November 2010 . 20802048 . 2953689 . 10.1128/JB.00844-10 .
  53. Anderson I, Djao OD, Misra M, Chertkov O, Nolan M, Lucas S, Lapidus A, Del Rio TG, Tice H, Cheng JF, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Brambilla E, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Sikorski J, Spring S, Rohde M, Eichinger K, Huber H, Wirth R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC . 6 . Complete genome sequence of Methanothermus fervidus type strain (V24S) . Standards in Genomic Sciences . 3 . 3 . 315–24 . November 2010 . 21304736 . 3035299 . 10.4056/sigs.1283367 .
  54. Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD, Kerlavage AR, Dougherty BA, Tomb JF, Adams MD, Reich CI, Overbeek R, Kirkness EF, Weinstock KG, Merrick JM, Glodek A, Scott JL, Geoghagen NS, Venter JC . 6 . Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii . Science . 273 . 5278 . 1058–73 . August 1996 . 8688087 . 10.1126/science.273.5278.1058 . 1996Sci...273.1058B . 41481616 .
  55. Hendrickson EL, Kaul R, Zhou Y, Bovee D, Chapman P, Chung J, Conway de Macario E, Dodsworth JA, Gillett W, Graham DE, Hackett M, Haydock AK, Kang A, Land ML, Levy R, Lie TJ, Major TA, Moore BC, Porat I, Palmeiri A, Rouse G, Saenphimmachak C, Söll D, Van Dien S, Wang T, Whitman WB, Xia Q, Zhang Y, Larimer FW, Olson MV, Leigh JA . 6 . Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis . Journal of Bacteriology . 186 . 20 . 6956–69 . October 2004 . 15466049 . 522202 . 10.1128/JB.186.20.6956-6969.2004 .
  56. Wang X, Greenfield P, Li D, Hendry P, Volk H, Sutherland TD . Complete genome sequence of a nonculturable Methanococcus maripaludis strain extracted in a metagenomic survey of petroleum reservoir fluids . Journal of Bacteriology . 193 . 19 . 5595 . October 2011 . 21914896 . 3187424 . 10.1128/JB.05835-11 .
  57. "Candidatus Methanoregula boonei 6A8". http://genome.jgi-psf.org/metbo/metbo.info.html
  58. Erkel C, Kube M, Reinhardt R, Liesack W . Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere . Science . 313 . 5785 . 370–2 . July 2006 . 16857943 . 10.1126/science.1127062 . 2006Sci...313..370E . 42808519 .
  59. Sakai S, Imachi H, Hanada S, Ohashi A, Harada H, Kamagata Y . Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov . International Journal of Systematic and Evolutionary Microbiology . 58 . Pt 4 . 929–36 . April 2008 . 18398197 . 10.1099/ijs.0.65571-0 . free .
  60. Sakai S, Takaki Y, Shimamura S, Sekine M, Tajima T, Kosugi H, Ichikawa N, Tasumi E, Hiraki AT, Shimizu A, Kato Y, Nishiko R, Mori K, Fujita N, Imachi H, Takai K . 6 . Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales . PLOS ONE . 6 . 7 . e22898 . 2011 . 21829548 . 3146512 . 10.1371/journal.pone.0022898 . 2011PLoSO...622898S . free .
  61. Lü Z, Lu Y . Complete genome sequence of a thermophilic methanogen, Methanocella conradii HZ254, isolated from Chinese rice field soil . Journal of Bacteriology . 194 . 9 . 2398–9 . May 2012 . 22493204 . 3347084 . 10.1128/JB.00207-12 .
  62. Allen MA, Lauro FM, Williams TJ, Burg D, Siddiqui KS, De Francisci D, Chong KW, Pilak O, Chew HH, De Maere MZ, Ting L, Katrib M, Ng C, Sowers KR, Galperin MY, Anderson IJ, Ivanova N, Dalin E, Martinez M, Lapidus A, Hauser L, Land M, Thomas T, Cavicchioli R . 6 . The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation . The ISME Journal . 3 . 9 . 1012–35 . September 2009 . 19404327 . 10.1038/ismej.2009.45 . free . 2009ISMEJ...3.1012A .
  63. Anderson IJ, Sieprawska-Lupa M, Goltsman E, Lapidus A, Copeland A, Glavina Del Rio T, Tice H, Dalin E, Barry K, Pitluck S, Hauser L, Land M, Lucas S, Richardson P, Whitman WB, Kyrpides NC . 6 . Complete genome sequence of Methanocorpusculum labreanum type strain Z . Standards in Genomic Sciences . 1 . 2 . 197–203 . September 2009 . 21304657 . 3035222 . 10.4056/sigs.35575 .
  64. Anderson IJ, Sieprawska-Lupa M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Tice H, Dalin E, Barry K, Saunders E, Han C, Brettin T, Detter JC, Bruce D, Mikhailova N, Pitluck S, Hauser L, Land M, Lucas S, Richardson P, Whitman WB, Kyrpides NC . 6 . Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1 . Standards in Genomic Sciences . 1 . 2 . 189–96 . September 2009 . 21304656 . 3035220 . 10.4056/sigs.32535 .
  65. Web site: Info - Methanohalobium evestigatum Z-7303 . 2012-03-08 . https://web.archive.org/web/20150630091648/http://genome.jgi-psf.org/metev/metev.info.html . 2015-06-30 . dead .
  66. Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Chen F, Nolan M, Saunders E, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Lykidis A, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Goodwin L, Detter JC, Brettin T, Rohde M, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP . 6 . The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments . Archaea . 2010 . 690737 . December 2010 . 21234345 . 3017947 . 10.1155/2010/690737 . free .
  67. Barber RD, Zhang L, Harnack M, Olson MV, Kaul R, Ingram-Smith C, Smith KS . Complete genome sequence of Methanosaeta concilii, a specialist in aceticlastic methanogenesis . Journal of Bacteriology . 193 . 14 . 3668–9 . July 2011 . 21571998 . 3133334 . 10.1128/JB.05031-11 .
  68. Brambilla E, Djao OD, Daligault H, Lapidus A, Lucas S, Hammon N, Nolan M, Tice H, Cheng JF, Han C, Tapia R, Goodwin L, Pitluck S, Liolios K, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP . 6 . Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847) . Standards in Genomic Sciences . 3 . 2 . 203–11 . October 2010 . 21304750 . 3035365 . 10.4056/sigs.1183143 .
  69. Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, FitzHugh W, Calvo S, Engels R, Smirnov S, Atnoor D, Brown A, Allen N, Naylor J, Stange-Thomann N, DeArellano K, Johnson R, Linton L, McEwan P, McKernan K, Talamas J, Tirrell A, Ye W, Zimmer A, Barber RD, Cann I, Graham DE, Grahame DA, Guss AM, Hedderich R, Ingram-Smith C, Kuettner HC, Krzycki JA, Leigh JA, Li W, Liu J, Mukhopadhyay B, Reeve JN, Smith K, Springer TA, Umayam LA, White O, White RH, Conway de Macario E, Ferry JG, Jarrell KF, Jing H, Macario AJ, Paulsen I, Pritchett M, Sowers KR, Swanson RV, Zinder SH, Lander E, Metcalf WW, Birren B . 6 . The genome of M. acetivorans reveals extensive metabolic and physiological diversity . Genome Research . 12 . 4 . 532–42 . April 2002 . 11932238 . 187521 . 10.1101/gr.223902 .
  70. Maeder DL, Anderson I, Brettin TS, Bruce DC, Gilna P, Han CS, Lapidus A, Metcalf WW, Saunders E, Tapia R, Sowers KR . 6 . The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes . Journal of Bacteriology . 188 . 22 . 7922–31 . November 2006 . 16980466 . 1636319 . 10.1128/JB.00810-06 .
  71. Deppenmeier U, Johann A, Hartsch T, Merkl R, Schmitz RA, Martinez-Arias R, Henne A, Wiezer A, Bäumer S, Jacobi C, Brüggemann H, Lienard T, Christmann A, Bömeke M, Steckel S, Bhattacharyya A, Lykidis A, Overbeek R, Klenk HP, Gunsalus RP, Fritz HJ, Gottschalk G . 6 . The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea . Journal of Molecular Microbiology and Biotechnology . 4 . 4 . 453–61 . July 2002 . 12125824 .
  72. Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, Belova GI, Aravind L, Natale DA, Rogozin IB, Tatusov RL, Wolf YI, Stetter KO, Malykh AG, Koonin EV, Kozyavkin SA . 6 . The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens . Proceedings of the National Academy of Sciences of the United States of America . 99 . 7 . 4644–9 . April 2002 . 11930014 . 123701 . 10.1073/pnas.032671499 . 2002PNAS...99.4644S . free .
  73. Gaspin C, Cavaillé J, Erauso G, Bachellerie JP . Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes . Journal of Molecular Biology . 297 . 4 . 895–906 . April 2000 . 10736225 . 10.1006/jmbi.2000.3593 .
  74. Maeder DL, Weiss RB, Dunn DM, Cherry JL, González JM, DiRuggiero J, Robb FT . Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences . Genetics . 152 . 4 . 1299–305 . August 1999 . 10.1093/genetics/152.4.1299 . 10430560 . 1460691 .
  75. Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S, Sekine M, Baba S, Kosugi H, Hosoyama A, Nagai Y, Sakai M, Ogura K, Otsuka R, Nakazawa H, Takamiya M, Ohfuku Y, Funahashi T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Aoki K, Kikuchi H . 6 . Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3 . DNA Research . 5 . 2 . 55–76 . April 1998 . 9679194 . 10.1093/dnares/5.2.55 . free .
  76. Jun X, Lupeng L, Minjuan X, Oger P, Fengping W, Jebbar M, Xiang X . Complete genome sequence of the obligate piezophilic hyperthermophilic archaeon Pyrococcus yayanosii CH1 . Journal of Bacteriology . 193 . 16 . 4297–8 . August 2011 . 21705594 . 3147706 . 10.1128/JB.05345-11 .
  77. Vannier P, Marteinsson VT, Fridjonsson OH, Oger P, Jebbar M . Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP . Journal of Bacteriology . 193 . 6 . 1481–2 . March 2011 . 21217005 . 3067617 . 10.1128/JB.01490-10 .
  78. Zivanovic Y, Armengaud J, Lagorce A, Leplat C, Guérin P, Dutertre M, Anthouard V, Forterre P, Wincker P, Confalonieri F . 6 . Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea . Genome Biology . 10 . 6 . R70 . 2009 . 19558674 . 2718504 . 10.1186/gb-2009-10-6-r70 . free .
  79. Fukui T, Atomi H, Kanai T, Matsumi R, Fujiwara S, Imanaka T . Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes . Genome Research . 15 . 3 . 352–63 . March 2005 . 15710748 . 551561 . 10.1101/gr.3003105 .
  80. Lee HS, Kang SG, Bae SS, Lim JK, Cho Y, Kim YJ, Jeon JH, Cha SS, Kwon KK, Kim HT, Park CJ, Lee HW, Kim SI, Chun J, Colwell RR, Kim SJ, Lee JH . 6 . The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism . Journal of Bacteriology . 190 . 22 . 7491–9 . November 2008 . 18790866 . 2576655 . 10.1128/JB.00746-08 .
  81. Mardanov AV, Ravin NV, Svetlitchnyi VA, Beletsky AV, Miroshnichenko ML, Bonch-Osmolovskaya EA, Skryabin KG . Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis . Applied and Environmental Microbiology . 75 . 13 . 4580–8 . July 2009 . 19447963 . 2704819 . 10.1128/AEM.00718-09 . 2009ApEnM..75.4580M .
  82. Wang X, Gao Z, Xu X, Ruan L . Complete genome sequence of Thermococcus sp. strain 4557, a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area . Journal of Bacteriology . 193 . 19 . 5544–5 . October 2011 . 21914870 . 3187469 . 10.1128/JB.05851-11 .
  83. Oger P, Sokolova TG, Kozhevnikova DA, Chernyh NA, Bartlett DH, Bonch-Osmolovskaya EA, Lebedinsky AV . Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide . Journal of Bacteriology . 193 . 24 . 7019–20 . December 2011 . 22123768 . 3232831 . 10.1128/JB.06259-11 .
  84. Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF . Genome dynamics in a natural archaeal population . Proceedings of the National Academy of Sciences of the United States of America . 104 . 6 . 1883–8 . February 2007 . 17267615 . 1794283 . 10.1073/pnas.0604851104 . 2007PNAS..104.1883A . free .
  85. Fütterer O, Angelov A, Liesegang H, Gottschalk G, Schleper C, Schepers B, Dock C, Antranikian G, Liebl W . 6 . Genome sequence of Picrophilus torridus and its implications for life around pH 0 . Proceedings of the National Academy of Sciences of the United States of America . 101 . 24 . 9091–6 . June 2004 . 15184674 . 428478 . 10.1073/pnas.0401356101 . 2004PNAS..101.9091F . free .
  86. Ruepp A, Graml W, Santos-Martinez ML, Koretke KK, Volker C, Mewes HW, Frishman D, Stocker S, Lupas AN, Baumeister W . 6 . The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum . Nature . 407 . 6803 . 508–13 . September 2000 . 11029001 . 10.1038/35035069 . 2000Natur.407..508R . free .
  87. Kawashima T, Amano N, Koike H, Makino S, Higuchi S, Kawashima-Ohya Y, Watanabe K, Yamazaki M, Kanehori K, Kawamoto T, Nunoshiba T, Yamamoto Y, Aramaki H, Makino K, Suzuki M . 6 . Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium . Proceedings of the National Academy of Sciences of the United States of America . 97 . 26 . 14257–62 . December 2000 . 11121031 . 18905 . 10.1073/pnas.97.26.14257 . 2000PNAS...9714257K . free .
  88. Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP, Brochier-Armanet C, Kunin V, Anderson I, Lapidus A, Goltsman E, Barry K, Koonin EV, Hugenholtz P, Kyrpides N, Wanner G, Richardson P, Keller M, Stetter KO . 6 . A korarchaeal genome reveals insights into the evolution of the Archaea . Proceedings of the National Academy of Sciences of the United States of America . 105 . 23 . 8102–7 . June 2008 . 18535141 . 2430366 . 10.1073/pnas.0801980105 . 2008PNAS..105.8102E . free .
  89. Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, Kretz K, Lin X, Mathur E, Ni J, Podar M, Richardson T, Sutton GG, Simon M, Soll D, Stetter KO, Short JM, Noordewier M . 6 . The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism . Proceedings of the National Academy of Sciences of the United States of America . 100 . 22 . 12984–8 . October 2003 . 14566062 . 240731 . 10.1073/pnas.1735403100 . 2003PNAS..10012984W . free .
  90. Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J, Preston C, de la Torre J, Richardson PM, DeLong EF . 6 . Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum . Proceedings of the National Academy of Sciences of the United States of America . 103 . 48 . 18296–301 . November 2006 . 17114289 . 1643844 . 10.1073/pnas.0608549103 . 2006PNAS..10318296H . free .
  91. Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR . Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis . PLOS ONE . 6 . 2 . e16626 . February 2011 . 21364937 . 3043068 . 10.1371/journal.pone.0016626 . 2011PLoSO...616626B . free .
  92. Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, Brochier-Armanet C, Chain PS, Chan PP, Gollabgir A, Hemp J, Hügler M, Karr EA, Könneke M, Shin M, Lawton TJ, Lowe T, Martens-Habbena W, Sayavedra-Soto LA, Lang D, Sievert SM, Rosenzweig AC, Manning G, Stahl DA . 6 . Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea . Proceedings of the National Academy of Sciences of the United States of America . 107 . 19 . 8818–23 . May 2010 . 20421470 . 2889351 . 10.1073/pnas.0913533107 . 2010PNAS..107.8818W . free .

This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "List of sequenced archaeal genomes".

Except where otherwise indicated, Everything.Explained.Today is © Copyright 2009-2024, A B Cryer, All Rights Reserved. Cookie policy.