The following lists the top 100 albums of 1999 in Australia from the Australian Recording Industry Association (ARIA) End of Year Albums Chart.[1] [2]
| Title | Artist | Highest pos. reached | weeks at No. 1 | ||
|---|---|---|---|---|---|
| 1. | Come On Over | 1 | 20 | ||
| 2. | One Night Only | 1 | 6 [3] | ||
| 3. | Americana | 1 | 5 | ||
| 4. | Affirmation | 1 | 6 | ||
| 5. | Songs from Dawson's Creek | Soundtrack | 1 | 6 [4] | |
| 6. | Ricky Martin | 1 | 1 [5] | ||
| 7. | Baby One More Time | 2 | |||
| 8. | ABBA Gold | 1 | 2 | ||
| 9. | Californication | 1 | 1 [6] | ||
| 10. | You've Come a Long Way, Baby | 2 | |||
| 11. | Millennium | 2 | |||
| 12. | Songs from Ally McBeal | 1 | 1 [7] | ||
| 13. | The Living End | 1 | 2 | ||
| 14. | Follow the Leader | 1 | 1 | ||
| 15. | All the Way... A Decade of Song | 1 | 2 | ||
| 16. | Neon Ballroom | 1 | 1 [8] | ||
| 17. | Internationalist | 1 | 1 [9] | ||
| 18. | Issues | 1 | 2 [10] | ||
| 19. | Ladies and Gentlemen ... The Best of | 2 | |||
| 20. | The Party Album | 4 | |||
| 21. | Spirit | 5 | |||
| 22. | Notting Hill | Soundtrack | 4 | ||
| 23. | Believe | 13 | |||
| 24. | Highlights from The Main Event | 1 | 2 [11] | ||
| 25. | Talk on Corners | 9 | |||
| 26. | Supernatural | 1 | 1 | ||
| 27. | Sogno | 3 | |||
| 28. | The Best of 1980–1990 | 1 | 5 | ||
| 29. | Counting Down | 1 | 1 | ||
| 30. | Soundtrack | 1 | 1 | ||
| 31. | On How Life Is | 1 | 8 | ||
| 32. | Sacred Arias | 7 | |||
| 33. | 5ive | 8 | |||
| 34. | Soul's Core | 11 | |||
| 35. | The Battle of Los Angeles | 2 | |||
| 36. | The Distance to Here | 1 | 1 | ||
| 37. | Imaginate | 1 | 1 | ||
| 38. | Significant Other | 5 | |||
| 39. | Romanza | 2 | |||
| 40. | True Romantic | 9 | |||
| 41. | Invincible | 5 | |||
| 42. | S&M | 1 | 1 | ||
| 43. | B*Witched | 5 | |||
| 44. | Stepping Stones | 4 | |||
| 45. | Celebrity Skin | 4 | |||
| 46. | The Miseducation of Lauryn Hill | 2 | |||
| 47. | FanMail | 15 | |||
| 48. | Pokémon: The First Movie | Soundtrack | 9 | ||
| 49. | Reload | 3 | |||
| 50. | By Request | 3 | |||
| 51. | Live at the Regent Theatre – 1st July 1999 | 7 | |||
| 52. | Austin Powers: The Spy Who Shagged Me | Soundtrack | 5 | ||
| 53. | A Little Bit of Mambo | 19 | |||
| 54. | Yourself or Someone Like You | 1 | 6 | ||
| 55. | Enema of the State | 4 | |||
| 56. | The Greatest Hits | 5 | |||
| 57. | Wide Open Spaces | 35 | |||
| 58. | The Ultimate Collection | 10 | |||
| 59. | 4 | ||||
| 60. | Michael Hutchence | 3 | |||
| 61. | Ray of Light | 1 | 1 | ||
| 62. | Breathing Tornados | 13 | |||
| 63. | Synkronized | 1 | 1 | ||
| 64. | Life Is Peachy | 26 | |||
| 65. | Easy | 4 | |||
| 66. | Soundtrack | 5 | |||
| 67. | Chisel | 3 | |||
| 68. | Left of the Middle | 1 | 3 | ||
| 69. | Love This City | 3 | |||
| 70. | Of Someday Shambles | 2 | |||
| 71. | Rainbow | 4 | |||
| 72. | Greatest Hits | 11 | |||
| 73. | Pokémon 2.B.A. Master | Soundtrack | 20 | ||
| 74. | Songs from the Last Century | 12 | |||
| 75. | Dizzy Up the Girl | 17 | |||
| 76. | Korn | 46 | |||
| 77. | 5 | 17 | |||
| 78. | Love Will Always Win | 20 | |||
| 79. | On the 6 | 11 | |||
| 80. | Afterglow | 36 | |||
| 81. | The Ultimate Collection | 30 | |||
| 82. | Sunburn | 16 | |||
| 83. | ...art | 2 | |||
| 84. | Nimrod | 3 | |||
| 85. | Charlotte Church | 41 | |||
| 86. | The Way It Is | 10 | |||
| 87. | Without You I'm Nothing | 14 | |||
| 88. | 17 | ||||
| 89. | Live on Two Legs | 4 | |||
| 90. | Jump and Jive with Hi-5 | 33 | |||
| 91. | VH1 Divas Live | 12 | |||
| 92. | Music Live from the Panel | 15 | |||
| 93. | Do Not Talk Over Me | 11 | |||
| 94. | Version 2.0 | 5 | |||
| 95. | Never Say Never | 13 | |||
| 96. | South Park: Bigger, Longer & Uncut | Soundtrack | 6 | ||
| 97. | Family Values Tour '98 | 8 | |||
| 98. | Unplugged | 14 | |||
| 99. | Schizophonic | 22 | |||
| 100. | Astro Lounge | 29 |
Peak chart positions from 1999 are from the ARIA Charts, overall position on the End of Year Chart is calculated by ARIA based on the number of weeks and position that the records reach within the Top 50 albums for each week during 1999.[2]