This is a list of Maltese football transfers for the 2012–13 winter transfer window by club. Only transfers of clubs in the Maltese Premier League and Maltese First Division are included.
The winter transfer window opened on 2 January 2013, although a few transfers may take place prior to that date. The window closed at midnight on 31 January 2013. Players without a club may join one at any time, either during or in between transfer windows.
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