This article contains the list of Indonesian animals.
| Species name | Family | Region | Vernacular name | Status | |
|---|---|---|---|---|---|
| Aethopyga duyvenbodei | Nectariniidae | Sangihe island | Elegant sunbird | EN | |
| Gracula robusta | Sturnidae | North Sumatra | Nias hill myna | CR | |
| Ailurops ursinus | Phalangeridae | Sulawesi | Sulawesi bear cuscus | ||
| Axis kuhlii | Cervidae | East Java | Bawean deer | ||
| Babyrousa babyrussa | Suidae | Sulawesi | Buru babirusa | ||
| Barbourula kalimantanensis | Bombinatoridae | Borneo | Bornean flat-headed frog | EN | |
| Bubalus depressicornis | Bovidae | Sulawesi | Low-land anoa | ||
| Bubalus quarlesi | Bovidae | Sulawesi | Mountain anoa | ||
| Callosciurus adamsi | Sciuridae | Borneo | |||
| Capricornis sumatraensis sumatraensis | Bovidae | Sumatra | |||
| Casuarius bennetti | Casuariidae | Papua | Dwarf cassowary | ||
| Casuarius unappendiculatus | Casuariidae | Papua | |||
| Catopuma badia | Felidae | Borneo | Bay cat | ||
| Cervus timorensis | Cervidae | Bali, Java island, Timor | Javan deer | ||
| Chelodina mccordi | Chelidae | Nusa Tenggara Timur | Roti Island snake-necked turtle | ||
| Chelonia mydas | Cheloniidae | Java island | Green turtle | ||
| Crocodylus raninus[1] | Crocodylidae | Borneo | |||
| Dendrolagus pulcherrimus | Macropodidae | Papua | Golden-mantled tree-kangaroo | ||
| Dermochelys coriacea | Cheloniidae | Java island | |||
| Dicerorhinus sumatrensis | Rhinocerotidae | Sumatra | Sumatran rhinoceros | ||
| Eos cyanogenia | Psittacidae | Papua | Black-winged lory | ||
| Eretmochelys imbricata | Cheloniidae | Java island | Hawksbill sea turtle | ||
| Hemiscyllium freycineti | Hemiscylliidae | Papua | Indonesian speckled carpetshark | ||
| Hylobates moloch | Hylobatidae | Java island | Silvery gibbon | ||
| Hylobates muelleri | Hylobatidae | Borneo | Müller's Bornean gibbon | ||
| Hystrix javanica | Hystricidae | Java island | Sunda porcupine | ||
| Hystrix sumatrae | Hystricidae | Java island | |||
| Lanthanotus borneensis | Scincidae | Borneo | Earless monitor | ||
| Lariscus hosei | Sciuridae | Borneo | |||
| Lepidochelys olivacea | Cheloniidae | Java island | |||
| Leptophryne cruentata | Bufonidae | West Java | Bleeding toad | ||
| Leucopsar rothschildi | Sturnidae | Bali | |||
| Macaca nigra | Cercopithecidae | North Sulawesi | Celebes crested macaque | ||
| Macaca pagensis | Cercopithecidae | Mentawai | |||
| Macrocephalon maleo | Megapodiidae | Central Sulawesi | Maleo | ||
| Macrogalidia musschenbroekii | Viverridae | Sulawesi | Sulawesi palm civet | ||
| Naja sputatrix | Elapidae | Indonesian spitting cobra | |||
| Naja sumatrana | Elapidae | Sumatra | Sumatran spitting cobra | ||
| Nesolagus netscheri | Leporidae | Sumatra | Sumatran striped rabbit | ||
| Nisaetus floris | Accipitridae | Lesser Sundas | Flores hawk-eagle | CR | |
| Orcaella brevirostris | Delphinidae | East Borneo | Irrawaddy dolphin | ||
| Otus manadensis siaoensis | Strigidae | Siau Island | Siau scops owl | CR | |
| Panthera pardus | Felidae | Java island | java leopard | ||
| Panthera tigris sumatrae | Felidae | Sumatra | Sumatra tiger | ||
| Paradisaea rubra | Paradisaeidae | Papua | Bird of Paradise | ||
| Phalanger alexandrae | Phalangeridae | North Maluku | Gebe cuscus | ||
| Phalanger matabiru | Phalangeridae | Maluku | |||
| Phalanger rothschildi | Phalangeridae | Maluku | |||
| Philautus jacobsoni | Phalangeridae | Central Java | |||
| Pongo abelli | Hominidae | Sumatra | Sumatran orangutan | ||
| Pongo pygmaeus | Hominidae | Borneo | Bornean orangutan | ||
| Pongo tapanuliensis | Hominidae | Sumatra | Tapanuli orangutan | ||
| Presbytis comata | Cercopithecidae | Java island | Javan surili | ||
| Presbytis frontata | Cercopithecidae | Borneo | |||
| Presbytis rubicunda | Cercopithecidae | Borneo | |||
| Prionailurus bengalensis | Felidae | Java island | |||
| Rhinoceros sondaicus | Rhinocerotidae | West Java | |||
| Scleropages formosus | Osteoglossidae | Sumatra | Asian arowana | ||
| Simias concolor | Cercopithecidae | Mentawai | Pig-tailed langur | ||
| Strigocuscus celebensis | Phalangeridae | Sulawesi | Sulawesi dwarf cuscus | ||
| Sundasciurus juvencus | Sciuridae | Sumatra, Bali | |||
| Taphozous achates | Emballonuridae | Bali | Tomb bat | ||
| Tarsius bancanus | Tarsiidae | Sumatra, Borneo | Bangka tarsius | ||
| Tarsius pelengensis | Tarsiidae | Sulawesi | Peleng tarsius | ||
| Tarsius pumilus | Tarsiidae | Sulawesi | Pygmy tarsius | ||
| Tarsius sangirensis | Tarsiidae | North Sulawesi | Sangir tarsius | ||
| Tarsius tarsier | Tarsiidae | North Sulawesi | Sulawesi tarsius | ||
| Trachypithecus auratus | Cercopithecidae | Java island | Javan lutung | ||
| Tragulus javanicus | Tragulidae | Java island | Java Mouse-deer | ||
| Tupaia chrysogaster | Tupaiidae | Mentawai | Golden-bellied treeshrew | ||
| Varanus komodoensis | Varanidae | Nusa Tenggara | Komodo dragon | ||
| Sturnus melanopterus | sturnidae | Java | Black-winged myna | ||
| Sturnus tricolor | Sturnidae | Java | Grey-backed myna | ||
| Sturnus tertius | Sturnidae | Bali | Grey-rumped myna | ||
| Aethopyga mystacalis | Nectarinidae | Java | Javan sunbird | ||
| Aethopyga eximia | Nectarinidae | Java | White-flanked sunbird | ||
| Psaltria exilis | Aegithalidae | Java | Pygmy bushtit | ||
| Halcyon cyanoventris | Alcedinidae | Java | Javan kingfisher | ||
| Alcedo coerulescens | Alcedinidae | Java, Nusa Tenggara, Sumatera | Cerulean Kingfisher | ||
| Species name | Family | Region | Vernacular name | Status |