Following is a list of 1. FC Tatran Prešov seasons.
| Season | Division (Name) | Pos./Teams | Pl. | W | D | L | GS | GA | P | Domestic Cup | Europe | Notes | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1993–1994 | 1st (Mars Superliga) | 4/(12) | 32 | 10 | 14 | 8 | 47 | 43 | 34 | align=center bgcolor=silver | Runner-up | ||||
| 1994–1995 | 1st (Mars Superliga) | 9/(12) | 32 | 9 | 10 | 13 | 42 | 49 | 37 | UC | 1/16 finals (second round) | ||||
| 1995–1996 | 1st (Mars Superliga) | 5/(12) | 32 | 12 | 7 | 13 | 34 | 36 | 43 | ||||||
| 1996–1997 | 1st (Mars Superliga) | 6/(16) | 30 | 12 | 7 | 11 | 37 | 38 | 43 | align=center bgcolor=silver | Runner-up | ||||
| 1997–1998 | 1st (Mars Superliga) | 10/(16) | 30 | 9 | 9 | 12 | 29 | 39 | 36 | ||||||
| 1998–1999 | 1st (Mars Superliga) | 8/(16) | 30 | 11 | 10 | 9 | 38 | 35 | 43 | ||||||
| 1999–2000 | 1st (Mars Superliga) | 6/(16) | 30 | 14 | 5 | 11 | 38 | 42 | 47 | ||||||
| 2000–2001 | 1st (Mars Superliga) | 7/(10) | 36 | 10 | 10 | 16 | 44 | 54 | 40 | ||||||
| 2001–2002 | 1st (Mars Superliga) | 10/(10) | 36 | 8 | 7 | 21 | 35 | 66 | 40 | ||||||
| 2002–2003 | 2nd (1. liga) | 9/(16) | 30 | 11 | 6 | 13 | 40 | 37 | 39 | 1/4 finals | |||||
| 2003–2004 | 2nd (1. liga) | align=center bgcolor=tan | 3/(16) | 30 | 15 | 7 | 8 | 54 | 35 | 52 | 1/8 finals | ||||
| 2004–2005 | 2nd (1. liga) | 5/(16) | 30 | 12 | 8 | 10 | 38 | 33 | 44 | 1/32 finals | |||||
| 2005–2006 | 2nd (1. liga) | 5/(16) | 30 | 15 | 7 | 8 | 37 | 22 | 52 | 1/32 finals | |||||
| 2006–2007 | 2nd (1. liga) | 5/(12) | 36 | 16 | 14 | 6 | 55 | 25 | 62 | 1/8 finals | |||||
| 2007–2008 | 2nd (1. liga) | align=center bgcolor=gold | 1/(12) | 33 | 23 | 8 | 2 | 64 | 14 | 77 | 1/4 finals | ||||
| 2008–2009 | 1st (Corgoň Liga) | 7/(12) | 33 | 10 | 11 | 12 | 40 | 50 | 41 | 1/16 finals | |||||
| 2009–2010 | 1st (Corgoň Liga) | 8/(12) | 33 | 11 | 5 | 17 | 32 | 38 | 38 | 1/8 finals | |||||
| 2010–2011 | 1st (Corgoň Liga) | 11/(12) | 33 | 9 | 6 | 18 | 30 | 49 | 33 | 1/16 finals | |||||
| 2011–2012 | 1st (Corgoň Liga) | 10/(12) | 33 | 7 | 12 | 14 | 23 | 35 | 33 | 1/4 finals | |||||
| 2012–2013 | 1st (Corgoň Liga) | align=center bgcolor=red | 12/(12) | 33 | 8 | 9 | 16 | 21 | 41 | 33 | 1/16 finals | ||||