This is list of major wetlands (including bogs) in Estonia. The list is incomplete.
| Name | Area (ha) | Location (county, parish) | Further info | Image | |
|---|---|---|---|---|---|
| Aguparra Bog | Harju County, Anija Parish | ||||
| Emajõe-Suursoo | Tartu County | Large swampland around the river Emajõgi | |||
| Endla Wetland Complex | |||||
| Epu-Kakerdi Wetland Complex | |||||
| Järvesoo | Lääne-Viru County | ||||
| Kautla Bog | Järva County | part of Epu-Kakerdi Wetland Complex | |||
| Kakerdaja Bog[1] | Järva County, Järva Parish | ||||
| Kodru Bog | Järva County | part of Epu-Kakerdi Wetland Complex | |||
| Korva Bog | Valga County | ||||
| Koigi Bog | Saare County | ||||
| Koitjärve Bog | Harju County, Anija Parish | ||||
| Krivasoo Bog | Ida-Viru County | ||||
| Kuresoo Bog | 9000 ha | Viljandi County | Located in Soomaa National Park. The largest bog in Estonia ("Soomaa" means "Bogland") | ||
| Laeksaare Bog | Järva County | part of Epu-Kakerdi Wetland Complex | |||
| Lavassaare Wetland Complex | |||||
| Loosalu Bog | 3373 | Rapla County | |||
| Luhasoo | |||||
| Muraka Bog | |||||
| Niitvälja Bog | 100 ha | Harju County, Lääne-Harju Parish | |||
| Õismäe Bog | Harju County, Tallinn | ||||
| Ördi Bog | 7154 | Viljandi County | |||
| Orkjärv Bog | 3281 | Harju County, Nissi Parish | |||
| Pääsküla Bog | 900 | Harju County | |||
| Parika Bog | 3426 | Viljandi County | |||
| Peedla Wetland Complex | |||||
| Puhatu Bog | |||||
| Pususoo | Harju County | ||||
| Ratva Bog | Ida-Viru County | ||||
| Rubina Bog (or Lagesoo) | Valga County | ||||
| Selisoo | Ida-Viru County | ||||
| Soosaare Bog | Viljandi County | ||||
| Tabasalu Bog | |||||
| Tõlinõmme Bog | |||||
| Tolkuse Bog | |||||
| Valgesoo | |||||
| Viru Bog |