The 2008–09 version of the Jordan FA Cup was the 29th edition to be played. It is the premier knockout tournament for football teams in Jordan.
Al-Faisaly (Amman) went into this edition as the winner from 2007–08 and the club with the most wins, 16.
The cup winner were guaranteed a place in the 2010 AFC Cup.
16 teams play home and away matches as Knock out stage.|}
8 teams play home and away matches as Knock out stage.|}
4 teams play home and away matches as Knock out stage
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2 teams play a one leg final.