| Jonathan Stone | |
| Office: | 12th Mayor of Charlestown, Massachusetts |
| Term Start: | 1873 |
| Term End: | January 1, 1874 |
| Successor: | Office abolished |
| Office2: | Member of the Common Council of Charlestown, Massachusetts Ward 2 |
| Term Start2: | 1872 |
| Term End2: | January 1873 |
| Term Start3: | 1888 |
| Term End3: | 1888 |
| Birth Date: | April 29, 1823 |
| Death Date: | November 26, 1897 |
| Occupation: | Grocer |
| Spouse: | Sarah Rebecca Andrews; Mary L. Andrews |
Jonathan Stone (April 29, 1823 – November 26, 1897) was a Massachusetts politician who served on the Common Council, and as the twelfth and last mayor, of Charlestown, Massachusetts; and on the Revere, Massachusetts, Board of Selectmen.