John Mooney (born August 6, 1964) is an American sprint canoer who competed from the mid-1990s to the early 2000s (decade). He won a gold medal in the K-2 200 m event at the 1995 ICF Canoe Sprint World Championships in Duisburg.
Mooney also competed in two Summer Olympics, earning his best finish of sixth in the K-4 1000 m event at Sydney in 2000.
Mooney was born in Seattle, WA, and lives in Eugene, Oregon with his wife and two children.