| John Flannery | |
| Birth Date: | 11 April 1962 |
| Birth Place: | Salinas, California |
| Weight: | 170lb |
| College: | University of Southern California |
| Yearpro: | 1985 |
| Extour: | PGA Tour Ben Hogan Tour |
| Prowins: | 5 |
| Nwidewins: | 4 |
| Otherwins: | 1 |
| Masters: | DNP |
| Usopen: | T85: 1993 |
| Open: | DNP |
| Pga: | DNP |
| Award1: | Ben Hogan Tour money list winner |
| Year1: | 1992 |
| Award2: | Ben Hogan Tour Player of the Year |
| Year2: | 1992 |
John Flannery (born April 11, 1962) is an American professional golfer.
Flannery was born in Salinas, California. He attended the University of Southern California where he was an All American collegiate and turned pro in 1985.
Flannery was the leading money winner and Player of the Year on the Ben Hogan Tour during the 1992 season, where he had three victories. He played on the PGA Tour in 1993 and 1994.
Flannery retired from professional golf in 2001.
| No. | Date | Tournament | Winning score | Margin of victory | Runner(s)-up | |
|---|---|---|---|---|---|---|
| 1 | Ben Hogan Reno Open | −5 (70-70-71=211) | Playoff |  Rob Boldt, Tom Lehman, Esteban Toledo | ||
| 2 | Ben Hogan South Carolina Classic | −16 (66-65-69-72=272) | 5 strokes |  Steve Rintoul | ||
| 3 | Jun 7, 1992 | Ben Hogan Quicksilver Open | −11 (67-71-70-69=277) | 3 strokes | Steve Lowery | |
| 4 | Oct 4, 1992 | Ben Hogan Sonoma County Open | −17 (66-66-67=199) | 3 strokes | Mark Wurtz |
Ben Hogan Tour playoff record (1–0)