JAligner explained

JAligner is an open source Java implementation of the Smith-Waterman algorithm[1] with Gotoh's improvement[2] for biological local pairwise sequence alignment using the affine gap penalty model. It was written by Ahmed Moustafa.

See also

References

  1. Smith TF and Waterman MS (1981). Identification of common molecular subsequences. J Mol Biol, 147:195-197.
  2. Gotoh O (1982). An improved algorithm for matching biological sequences. J Mol Biol, 162:705-708.

External links

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