Haplogroup S-M230 Explained
S-M230 (S1a1b) |
Map: | Melanesia S ADN-Y.PNG |
Origin-Date: | 28,000-41,000 years before present |
Ancestor: | S1a1 (Z42413)[1] |
Descendants: | S1a1b1 (M254) |
Mutations: | M230, P202 |
Members: | Ekari 74% |
Haplogroup S-M230, also known as S1a1b (and previously as S* or K2b1a4), is a Y-chromosome DNA haplogroup. It is by far the most numerically significant subclade of Haplogroup S1a (and its sole primary subclade, Haplogroup S-P405).
S-M230 is commonly found among populations of the highlands of Papua New Guinea . It is also found at lower frequencies in adjacent parts of Indonesia and Melanesia.
Distribution
One study has reported finding haplogroup S-M230 in: 52% (16/31) of a sample from the Papua New Guinea (PNG) Highlands; 21% (7/34) of a sample from the Moluccas; 16% (5/31) of a sample from the Papua New Guinea coast; 12.5% (2/16) of a sample of Tolai from New Britain; 10% (3/31) of a sample from Nusa Tenggara, and; 2% (2/89) of a sample from the West New Guinea lowlands/coast.
One subclade, Haplogroup S-M226.1 (S1a1b1d1a; previously S1d) has been found at low frequencies in the Admiralty Islands and along the coast of mainland PNG. .
Phylogenetics
Structure & position within Haplogroup S
See main article: Haplogroup S-B254.
- S1a
- S1a1 Z42413
- S1a1a
- S1a1a1 P60, P304, P308
- S1a1a2
- S1a1b M230, P202, P204 – "demoted" in 2016 from its previous position as the basal Haplogroup S* (and known before that as Haplogroup K5)
- S1a1b1 (M254) (previously known as K2b1a4a)
- S1a1b1 (M254)
- S1a1b1a (P57)
- S1a1b1b (P61)
- S1a1b1c (P83)
- S1a1b1d (SK1891)
- S1a2 P79, P307
- S1a3 P315
(Based on the 2017 ISOGG tree,[2] the 2015 ISOGG tree,[3]) the 2008 YCC tree and other published research.)
History
See main article: Conversion table for Y chromosome haplogroups.
Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This led to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. Later, a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.
YCC 2002/2008 (Shorthand) | (α) | (β) | (γ) | (δ) | (ε) | (ζ) | (η) | YCC 2002 (Longhand) | YCC 2005 (Longhand) | YCC 2008 (Longhand) | YCC 2010r (Longhand) | ISOGG 2006 | ISOGG 2007 | ISOGG 2008 | ISOGG 2009 | ISOGG 2010 | ISOGG 2011 | ISOGG 2012 |
---|
K-M9 | 26 | VIII | 1U | 25 | Eu16 | H5 | F | K* | K | K | K | - | - | - | - | - | - | - |
|
Research publications
The following research teams per their publications were represented in the creation of the YCC tree.
2008 YCC tree
From 2002 to 2008, it was known as Haplogroup K5.
See also
Y-DNA backbone tree
References
Works cited
- . Cox. 2006. 10.1002/ajhb.20459. Y-chromosome diversity is inversely associated with language affiliation in paired Austronesian- and Papuan-speaking communities from Solomon Islands. Murray P.. Mirazón Lahr. Marta. American Journal of Human Biology. 18. 35–50. 16378340. 1. 4824401.
- . Karafet. 2008. 10.1101/gr.7172008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. T. M.. Mendez. F. L.. Meilerman. M. B.. Underhill. P. A.. Zegura. S. L.. Hammer. M. F.. Genome Research. 18. 5. 830–8. 18385274. 2336805.
- . Kayser. 2003. 10.1086/346065. Reduced Y-Chromosome, but Not Mitochondrial DNA, Diversity in Human Populations from West New Guinea. Manfred. Brauer. Silke. Weiss. Gunter. Schiefenhövel. Wulf. Underhill. Peter. Shen. Peidong. Oefner. Peter. Tommaseo-Ponzetta. Mila. Stoneking. Mark. The American Journal of Human Genetics. 72. 2. 281–302. 12532283. 379223.
- . Kayser. 2008. 10.1093/molbev/msn078. The Impact of the Austronesian Expansion: Evidence from mtDNA and Y Chromosome Diversity in the Admiralty Islands of Melanesia. M.. Choi. Y.. Van Oven. M.. Mona. S.. Brauer. S.. Trent. R. J.. Suarkia. D.. Schiefenhovel. W.. Stoneking. M.. Molecular Biology and Evolution. 25. 7. 1362–74. 18390477. free.
- . Mona. S.. Tommaseo-Ponzetta. M.. Brauer. S.. Sudoyo. H.. Marzuki. S.. Kayser. M.. 2007. 10.1093/molbev/msm187. 17846104. 24. 11. Patterns of Y-chromosome diversity intersect with the Trans-New Guinea hypothesis. Mol. Biol. Evol.. 2546–55. free.
- . Scheinfeldt. 2006. 10.1093/molbev/msl028. Unexpected NRY Chromosome Variation in Northern Island Melanesia. L.. Molecular Biology and Evolution. 23. 8. 1628–41. 16754639. Friedlaender. F. Friedlaender. J. Latham. K. Koki. G. Karafet. T. Hammer. M. Lorenz. J. free.
Sources for conversion tables
- Capelli . Cristian . Wilson . James F. . Richards . Martin . Stumpf . Michael P.H. . Gratrix . Fiona . 4 . A Predominantly Indigenous Paternal Heritage for the Austronesian-Speaking Peoples of Insular Southeast Asia and Oceania . The American Journal of Human Genetics . February 2001 . 68 . 2 . 432–443 . 10.1086/318205 . 11170891 . 1235276 . .
- Hammer . Michael F. . Karafet . Tatiana M. . Redd . Alan J. . Jarjanazi . Hamdi . Santachiara-Benerecetti . Silvana . 4 . Hierarchical Patterns of Global Human Y-Chromosome Diversity . Molecular Biology and Evolution . 1 July 2001 . 18 . 7 . 1189–1203 . 10.1093/oxfordjournals.molbev.a003906 . 11420360 . . free .
- Kaladjieva . Luba . Calafell . Francesc . Jobling . Mark A . Angelicheva . Dora . de Knijff . Peter . 4 . Patterns of inter- and intra-group genetic diversity in the Vlax Roma as revealed by Y chromosome and mitochondrial DNA lineages . European Journal of Human Genetics . February 2001 . 9 . 2 . 97–104 . 10.1038/sj.ejhg.5200597 . 11313742 . 21432405 . . free .
- Karafet . Tatiana . Xu . Liping . Du . Ruofu . Wang . William . Feng . Shi . 4 . Paternal Population History of East Asia: Sources, Patterns, and Microevolutionary Processes . The American Journal of Human Genetics . September 2001 . 69 . 3 . 615–628 . 10.1086/323299 . 11481588 . 1235490 . . free .
- Su . Bing . Xiao . Junhua . Underhill . Peter . Deka . Ranjan . Zhang . Weiling . 4 . Y-Chromosome Evidence for a Northward Migration of Modern Humans into Eastern Asia during the Last Ice Age . The American Journal of Human Genetics . December 1999 . 65 . 6 . 1718–1724 . 10.1086/302680 . 10577926 . 1288383 . .
- Underhill . Peter A. . Shen . Peidong . Lin . Alice A. . Jin . Li . Passarino . Giuseppe . 4 . Y chromosome sequence variation and the history of human populations . Nature Genetics . November 2000 . 26 . 3 . 358–361 . 10.1038/81685 . 11062480 . 12893406 . .
Further reading
- Haber. 2012. 10.1371/journal.pone.0034288. Afghanistan's Ethnic Groups Share a Y-Chromosomal Heritage Structured by Historical Events. Kayser. Manfred. Marc. Platt. Daniel E.. Ashrafian Bonab. Maziar. Youhanna. Sonia C.. Soria-Hernanz. David F.. Martínez-Cruz. Begoña. Douaihy. Bouchra. Ghassibe-Sabbagh. Michella. Rafatpanah. Hoshang. Ghanbari. M. Whale. J. Balanovsky. O. Wells. R. S.. Comas. D. Tyler-Smith. C. Zalloua. P. A.. Genographic. Consortium. PLOS ONE. 7. 3. e34288. 22470552. 3314501. 2012PLoSO...734288H. 8. free.
- Karafet. 2005. 10.1353/hub.2005.0030. Balinese Y-Chromosome Perspective on the Peopling of Indonesia: Genetic Contributions from Pre-Neolithic Hunter-Gatherers, Austronesian Farmers, and Indian Traders. Tatiana M.. Lansing. J. S.. Redd. Alan J.. Watkins. Joseph C.. Surata. S. P. K.. Arthawiguna. W. A.. Mayer. Laura. Bamshad. Michael. Jorde. Lynn B.. Hammer. Michael F.. Hammer. M. F.. Human Biology. 77. 93–114. 16114819. 1. 8. 1808/13586. 7953854. free.
- Kayser. 2006. 10.1093/molbev/msl093. Melanesian and Asian Origins of Polynesians: MtDNA and Y Chromosome Gradients Across the Pacific. M.. Molecular Biology and Evolution. 23. 11. 2234–44. 16923821. Brauer. S. Cordaux. R. Casto. A. Lao. O. Zhivotovsky. LA. Moyse-Faurie. C. Rutledge. RB. Schiefenhoevel. W. Gil. D. Lin. A. A.. Underhill. P. A.. Oefner. P. J.. Trent. R. J.. Stoneking. M. 8. free. 11858/00-001M-0000-0010-0145-0. free.
Phylogenetics
Notes and References
- Web site: Browse Articles | European Journal of Human Genetics. www.nature.com. 25 March 2023.
- https://isogg.org/tree/ISOGG_HapgrpS.html International Society of Genetic Genealogy (ISOGG; 2017), Y-DNA Haplogroup Tree 2017
- http://www.isogg.org/tree/ISOGG_HapgrpS.html International Society of Genetic Genealogy (ISOGG; 2015), Y-DNA Haplogroup Tree 2015.