GDP-mannose 3,5-epimerase explained

GDP-mannose 3,5-epimerase
Ec Number:	5.1.3.18
Cas Number:	72162-82-4
Go Code:	0047918

In enzymology, a GDP-mannose 3,5-epimerase is an enzyme that catalyzes the chemical reaction

GDP-mannose

\rightleftharpoons GDP-L-galactose + GDP-L-gulose - initial reaction overview (updated in 2020, see below)

Hence, this enzyme has one substrate, GDP-mannose, and two products, GDP-L-galactose and GDP-L-gulose

Since only GDP-L-gulose (the C5-epimer of GDP-D-mannose) was found in the reaction mixture, it was postulated that the enzyme performs the C5-epimerization prior to the C3-epimerization. However, GDP-D-altrose was recently found as a reaction product, which means that both reaction routes can occur: C5-prior-to-C3 and C3-prior-to-C5. This also means that the GDP-mannose 3,5-epimerase has three reaction products, namely the main product GDP-L-galactose (C3,5-epimer) and two sideproducts GDP-L-gulose (C5-epimer) + GDP-D-altrose (C3-epimer).

GDP-D-mannose

\rightleftharpoons GDP-L-galactose (C3,5-epimer) + GDP-L-gulose (C5-epimer) + GDP-D-altrose (C3-epimer) - reaction overview update in 2020

This enzyme belongs to the family of isomerases, specifically those racemases and epimerases acting on carbohydrates and derivatives. The systematic name of this enzyme class is GDP-mannose 3,5-epimerase. Other names in common use include GDP-D-mannose:GDP-L-galactose epimerase, guanosine 5'-diphosphate D-mannose:guanosine 5'-diphosphate, GM35E,^[1] and L-galactose epimerase. This enzyme participates in ascorbate and aldarate metabolism.

Structural studies

As of late 2007, 4 structures have been solved for this class of enzymes, with PDB accession codes,,, and .

References

• Book: Barber GA, Hebda PA . GDP-d-mannose: GDP-l-galactose epimerase from Chlorella pyrenoidosa . 1982 . Complex Carbohydrates Part D . 83 . 522 - 5 . 7098948 . 10.1016/0076-6879(82)83046-2 . Methods in Enzymology . 978-0-12-181983-5 .
• Hebda PA, Behrman EJ, Barber GA . 1979 . The guanosine 5'-diphosphate D-mannose: guanosine 5'-diphosphate L-galactose epimerase of Chlorella pyrenoidosa. Chemical synthesis of guanosine 5'-diphosphate L-galactose and further studies of the enzyme and the reaction it catalyzes . Arch. Biochem. Biophys. . 194 . 496 - 502 . 443816 . 10.1016/0003-9861(79)90644-1 . 2 .
• Gevaert O, Van Overtveldt S, Beerens K, Desmet T . 2019 . Characterization of the First Bacterial and Thermostable GDP-Mannose 3,5-Epimerase . Int. J. Mol. Sci. . 20 . E3530 . 31330931 . 10.3390/ijms20143530 . 14 . 6678494 . free .
• Gevaert O, Van Overtveldt S, Da Costa M, Beerens K, Desmet T . 2020 . GDP-altrose as novel product of GDP-mannose 3,5-epimerase: Revisiting its reaction mechanism . Int J Biol Macromol . 165 . Pt B . 1862–1868 . 33075338 . 10.1016/j.ijbiomac.2020.10.067.

Notes and References

1. Beerens . Koen . Gevaert . Ophelia . Desmet . Tom . 2022-01-11 . GDP-Mannose 3,5-Epimerase: A View on Structure, Mechanism, and Industrial Potential . Frontiers in Molecular Biosciences . English . 8 . 10.3389/fmolb.2021.784142 . free . 35087867 . 8787198 . 2296-889X.