Flavobacterium-1 RNA motif explained

Flavobacterium-1
Symbol:Flavobacterium-1
Rfam:RF02976
Rna Type:Gene
sRNA

The Flavobacterium-1 RNA motif is a conserved RNA structure discovered by bioinformatics.[1] Flavobacterium-1 motif RNAs are found in metagenomic samples from the environment, and only one example of this motif is present in a classified organism. This organism is Flavobacterium sp. SCGC AAA160-P02, which belongs to the bacterial phylum Bacteroidota.

Flavobacterium-1 RNAs likely function in trans as small RNAs, and do not exhibit a clear association with any type of protein-coding gene. Most genes near Flavobacterium-1 RNAs fail to match known conserved protein domains, suggesting that they participate in a poorly studied biological process.

Notes and References

  1. Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR . Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions . Nucleic Acids Res. . 45 . 18 . 10811–10823 . October 2017 . 28977401 . 5737381 . 10.1093/nar/gkx699 .