Daniel Atkinson (biochemist) explained

Daniel Edward Atkinson
Birth Date:8 April 1921
Birth Place:Pawnee City, Nebraska, U.S.
Death Place:Corvallis, Oregon, U.S.
Fields:Biochemistry, especially metabolic regulation
Workplaces:California Institute of Technology, Argonne National Laboratories, University of California, Los Angeles
Education:University of Nebraska, Iowa State University (Ph.D.)
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Known For:Energy charge
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Daniel Edward Atkinson (April 8, 1921 – February 2, 2024) was an American biochemist who worked at UCLA for 40 years from 1952 until his retirement in 1992, though he continued his scientific work as Emeritus Professor.[1] He is best known for the concept of energy charge.[2]

Education

Atkinson was an undergraduate at the University of Nebraska, and obtained a Ph.D. at Iowa State University, where he investigated the synthesis of aromatic amino acids[3] and effects of p-fluorophenylalanine[4] in Lactobacillus arabinosus, under the supervision of Sidney Fox.

Career

After a post-doctoral period at the California Institute of Technology, followed by one as a research scientist at Argonne National laboratories, Atkinson moved to UCLA in 1952 as the second biochemist in the department. In his first work at UCLA he studied the bacterium Hydrogenomonas facilis, beginning with a description of the purification of hydrogenase.[5]

Atkinson remained at UCLA for the remainder of his career, where he undertook numerous studies of metabolic regulation. Of these the best known is his introduction of the concept of energy charge.

Energy charge

Atkinson and Walton[6] [7] introduced the concept of energy charge, later discussed more fully,[2] as a way to rationalize the dependence of metabolic processes on the proportions of the adenylates. For pairs of metabolites, such as the reduced and oxidized forms of NAD, a straightforward ratio of concentrations is sufficient, but the case of the adenylates is more complicated, as there are three components to be considered, AMP, ADP and ATP.

The three adenylates are related by the reaction catalysed by adenylate kinase:

ATP + AMP <=> 2 ADP

and on the basis of this equation Atkinson proposed the following ratio as a measure of the metabolic state of a cell:

Energycharge=

[ATP]+0.5[ADP]
[ATP]+[ADP]+[AMP]

Metabolic regulation

Atkinson's work on the energy charge was part of a broader interest in metabolic regulation and its mechanisms, and he contributed numerous influential publications in this field. In addition to general articles on metabolic regulation[8] [9] he also worked on specific enzymes, such as isocitrate dehydrogenase[10] and glutaminase,[11] and on the role of urea synthesis in vertebrates.[12]

Cellular Energy Metabolism and its Regulation

Atkinson's influential book on energy metabolism set out the concepts and understanding of metabolic regulation that had developed over the preceding decades (most notably by him), in particular explaining the role of ratios of metabolite concentrations, including the energy charge, in regulating enzyme properties.[13]

Later life and death

Atkinson spent his last years living in Corvallis, Oregon. He died on February 2, 2024, at the age of 102.[1]

Notes and References

  1. Web site: 2024-03-07 . dmy. Remembering Daniel E. Atkinson – Professor Emeritus of Chemistry and Biochemistry (1921 – 2024). UCLA. Catherine. Clarke. Steven. Clarke.
  2. 10.1021/bi00851a033 . The energy charge of the adenylate pool as a regulatory parameter: Interaction with feedback modifiers . Atkinson . D. E. . Biochemistry . 7 . 1 . 1968 . 4030–4034. 4972613 .
  3. 10.1016/0003-9861(51)90208-1 . Arch. Biochem. Biophys. . Atkinson . D. E. . Fox . S. W. . Synthesis of aromatic amino acids by mutant strains of Lactobacillus arabinosus . 1951 . 31 . 2 . 212–223. 14830228 .
  4. Effects of p-fluorophenylalanine on the growth of Lactobacillus arabinosus . Arch. Biochem. Biophys. . 1951 . 31 . 2 . 10.1016/0003-9861(51)90207-X . 205–211 . Atkinson . D. E. . Fox . S. W. . Melvin. S.. 14830227 .
  5. Atkinson . D. E. . McFadden . B. A. . The biochemistry of Hydrogenomonas 1. The hydrogenase of Hydrogenomonas facilis in cell-free preparations . J. Biol. Chem. . 210 . 2 . 885–893 . 1954. 10.1016/S0021-9258(18)65415-8 . 13211626 . free .
  6. 10.1016/S0021-9258(17)45240-9. Kinetics of regulatory enzymes: Escherichia coli phosphofructokinase . Atkinson . D. E. . Walton . G. M. . 757–763 . J. Biol. Chem. . 240 . 2 . 1965 . 14275132 . free .
  7. Adenosine triphosphate conservation in metabolic regulation: Rat liver citrate cleavage enzyme . J. Biol. Chem. . Atkinson . D. E. . Walton . G. M. . 1967 . 3239–3241 . 12 . 242. 10.1016/S0021-9258(18)95956-9 . 6027798 . free .
  8. 10.1126/science.150.3698.851 . Science . Atkinson. D. E. . Biological feedback control at the molecular level . 150 . 3698 . 1965 . 851–857. 5319760 . 1965Sci...150..851A .
  9. 10.1146/annurev.mi.23.100169.000403 . Annu. Rev. Microbiol. . 23 . 47–68. 1969. Atkinson. D. E. . Regulation of enzyme function. 4900062 .
  10. J. Biol. Chem. . 240 . 6 . Atkinson. D. E. . Hathaway . J. A. . Smith . E. C. . Kinetics of regulatory enzymes: Kinetic order of the yeast diphosphopyridine nucleotide isocitrate dehydrogenase reaction and a model for the reaction . 2682–2690 . 1965. 10.1016/S0021-9258(18)97380-1 . 14304886 . free .
  11. J. Biol. Chem. . 264 . 26 . 15357–15360 . Szweda . L. I.. Atkinson. D. E. . Response of rat-liver glutaminase to pH: Mediation by phosphate and ammonium ions. 1989 . 10.1016/S0021-9258(19)84835-4 . 2768267 . free .
  12. 10.1086/physzool.65.2.30158252. Atkinson. D. E. . Physiol. Zool. . 65 . 2 . 243–267 . Functional roles of urea synthesis in vertebrates. 1992. 87121092.
  13. Book: Atkinson, Daniel E. . 978-0120661503. Cellular Energy Metabolism and its Regulation . Academic Press . 1977.