Coenzyme A Explained

Coenzyme A (CoA, SHCoA, CoASH) is a coenzyme, notable for its role in the synthesis and oxidation of fatty acids, and the oxidation of pyruvate in the citric acid cycle. All genomes sequenced to date encode enzymes that use coenzyme A as a substrate, and around 4% of cellular enzymes use it (or a thioester) as a substrate. In humans, CoA biosynthesis requires cysteine, pantothenate (vitamin B5), and adenosine triphosphate (ATP).[1]

In its acetyl form, coenzyme A is a highly versatile molecule, serving metabolic functions in both the anabolic and catabolic pathways. Acetyl-CoA is utilised in the post-translational regulation and allosteric regulation of pyruvate dehydrogenase and carboxylase to maintain and support the partition of pyruvate synthesis and degradation.[2]

Discovery of structure

Coenzyme A was identified by Fritz Lipmann in 1946,[3] who also later gave it its name. Its structure was determined during the early 1950s at the Lister Institute, London, together by Lipmann and other workers at Harvard Medical School and Massachusetts General Hospital.[4] Lipmann initially intended to study acetyl transfer in animals, and from these experiments he noticed a unique factor that was not present in enzyme extracts but was evident in all organs of the animals. He was able to isolate and purify the factor from pig liver and discovered that its function was related to a coenzyme that was active in choline acetylation.[5] Work with Beverly Guirard, Nathan Kaplan, and others determined that pantothenic acid was a central component of coenzyme A.[6] [7] The coenzyme was named coenzyme A to stand for "activation of acetate". In 1953, Fritz Lipmann won the Nobel Prize in Physiology or Medicine "for his discovery of co-enzyme A and its importance for intermediary metabolism".[8]

Biosynthesis

Coenzyme A is naturally synthesized from pantothenate (vitamin B5), which is found in food such as meat, vegetables, cereal grains, legumes, eggs, and milk.[9] In humans and most living organisms, pantothenate is an essential vitamin that has a variety of functions.[10]  In some plants and bacteria, including Escherichia coli, pantothenate can be synthesised de novo and is therefore not considered essential. These bacteria synthesize pantothenate from the amino acid aspartate and a metabolite in valine biosynthesis.[11]

In all living organisms, coenzyme A is synthesized in a five-step process that requires four molecules of ATP, pantothenate and cysteine[12] (see figure):

  1. Pantothenate (vitamin B5) is phosphorylated to 4′-phosphopantothenate by the enzyme pantothenate kinase (PanK; CoaA; CoaX). This is the committed step in CoA biosynthesis and requires ATP.
  2. A cysteine is added to 4′-phosphopantothenate by the enzyme phosphopantothenoylcysteine synthetase (PPCS; CoaB) to form 4'-phospho-N-pantothenoylcysteine (PPC). This step is coupled with ATP hydrolysis.
  3. PPC is decarboxylated to 4′-phosphopantetheine by phosphopantothenoylcysteine decarboxylase (PPC-DC; CoaC)
  4. 4′-phosphopantetheine is adenylated (or more properly, AMPylated) to form dephospho-CoA by the enzyme phosphopantetheine adenylyl transferase (COASY; PPAT; CoaD)
  5. Finally, dephospho-CoA is phosphorylated to coenzyme A by the enzyme dephosphocoenzyme A kinase (COASY, DPCK; CoaE). This final step requires ATP.

Enzyme nomenclature abbreviations in parentheses represent mammalian, other eukaryotic, and prokaryotic enzymes respectively. In mammals steps 4 and 5 are catalyzed by a bifunctional enzyme called COASY.[13] This pathway is regulated by product inhibition. CoA is a competitive inhibitor for Pantothenate Kinase, which normally binds ATP. Coenzyme A, three ADP, one monophosphate, and one diphosphate are harvested from biosynthesis.

Coenzyme A can be synthesized through alternate routes when intracellular coenzyme A level are reduced and the de novo pathway is impaired.[14] In these pathways, coenzyme A needs to be provided from an external source, such as food, in order to produce 4′-phosphopantetheine. Ectonucleotide pyrophosphates (ENPP) degrade coenzyme A to 4′-phosphopantetheine, a stable molecule in organisms. Acyl carrier proteins (ACP) (such as ACP synthase and ACP degradation) are also used to produce 4′-phosphopantetheine. This pathway allows for 4′-phosphopantetheine to be replenished in the cell and allows for the conversion to coenzyme A through enzymes, PPAT and PPCK.[15]

A 2024 article detailed a plausible chemical synthesis mechanism for the pantetheine component (the main functional part) of coenzyme A in a primordial prebiotic world.

Commercial production

Coenzyme A is produced commercially via extraction from yeast, however this is an inefficient process (yields approximately 25 mg/kg) resulting in an expensive product. Various ways of producing CoA synthetically, or semi-synthetically have been investigated although none are currently operating at an industrial scale.[16]

Function

Fatty acid synthesis

Since coenzyme A is, in chemical terms, a thiol, it can react with carboxylic acids to form thioesters, thus functioning as an acyl group carrier. It assists in transferring fatty acids from the cytoplasm to mitochondria. A molecule of coenzyme A carrying an acyl group is also referred to as acyl-CoA. When it is not attached to an acyl group, it is usually referred to as 'CoASH' or 'HSCoA'. This process facilitates the production of fatty acids in cells, which are essential in cell membrane structure.

Coenzyme A is also the source of the phosphopantetheine group that is added as a prosthetic group to proteins such as acyl carrier protein and formyltetrahydrofolate dehydrogenase.[17] [18]

Energy production

Coenzyme A is one of five crucial coenzymes that are necessary in the reaction mechanism of the citric acid cycle. Its acetyl-coenzyme A form is the primary input in the citric acid cycle and is obtained from glycolysis, amino acid metabolism, and fatty acid beta oxidation. This process is the body's primary catabolic pathway and is essential in breaking down the building blocks of the cell such as carbohydrates, amino acids, and lipids.[19]

Regulation

When there is excess glucose, coenzyme A is used in the cytosol for synthesis of fatty acids.[20] This process is implemented by regulation of acetyl-CoA carboxylase, which catalyzes the committed step in fatty acid synthesis. Insulin stimulates acetyl-CoA carboxylase, while epinephrine and glucagon inhibit its activity.[21]

During cell starvation, coenzyme A is synthesized and transports fatty acids in the cytosol to the mitochondria. Here, acetyl-CoA is generated for oxidation and energy production. In the citric acid cycle, coenzyme A works as an allosteric regulator in the stimulation of the enzyme pyruvate dehydrogenase.

Antioxidant function and regulation

Discovery of the novel antioxidant function of coenzyme A highlights its protective role during cellular stress. Mammalian and Bacterial cells subjected to oxidative and metabolic stress show significant increase in the covalent modification of protein cysteine residues by coenzyme A.[22] [23] This reversible modification is termed protein CoAlation (Protein-S-SCoA), which plays a similar role to protein S-glutathionylation by preventing the irreversible oxidation of the thiol group of cysteine residues.

Using anti-coenzyme A antibody[24] and liquid chromatography tandem mass spectrometry (LC-MS/MS) methodologies, more than 2,000 CoAlated proteins were identified from stressed mammalian and bacterial cells.[25] The majority of these proteins are involved in cellular metabolism and stress response. Different research studies have focused on deciphering the coenzyme A-mediated regulation of proteins. Upon protein CoAlation, inhibition of the catalytic activity of different proteins (e.g. metastasis suppressor NME1, peroxiredoxin 5, GAPDH, among others) is reported.[26] [27] [23] [28] To restore the protein's activity, antioxidant enzymes that reduce the disulfide bond between coenzyme A and the protein cysteine residue play an important role. This process is termed protein deCoAlation. So far, two bacterial proteins, Thioredoxin A and Thioredoxin-like protein (YtpP), are shown to deCoAlate proteins.[29]

Use in biological research

Coenzyme A is available from various chemical suppliers as the free acid and lithium or sodium salts. The free acid of coenzyme A is detectably unstable, with around 5% degradation observed after 6 months when stored at −20 °C, and near complete degradation after 1 month at 37 °C.[30] The lithium and sodium salts of CoA are more stable, with negligible degradation noted over several months at various temperatures.[31] Aqueous solutions of coenzyme A are unstable above pH 8, with 31% of activity lost after 24 hours at 25 °C and pH 8. CoA stock solutions are relatively stable when frozen at pH 2–6. The major route of CoA activity loss is likely the air oxidation of CoA to CoA disulfides. CoA mixed disulfides, such as CoA-S–S-glutathione, are commonly noted contaminants in commercial preparations of CoA. Free CoA can be regenerated from CoA disulfide and mixed CoA disulfides with reducing agents such as dithiothreitol or 2-mercaptoethanol.

Non-exhaustive list of coenzyme A-activated acyl groups

Bibliography

Notes and References

  1. Daugherty M, Polanuyer B, Farrell M, Scholle M, Lykidis A, de Crécy-Lagard V, Osterman A . Complete reconstitution of the human coenzyme A biosynthetic pathway via comparative genomics . The Journal of Biological Chemistry . 277 . 24 . 21431–21439 . June 2002 . 11923312 . 10.1074/jbc.M201708200 . free .
  2. Web site: Coenzyme A: when small is mighty. www.asbmb.org. 2018-12-19. https://web.archive.org/web/20181220033910/http://www.asbmb.org/asbmbtoday/asbmbtoday_article.aspx?id=48246. 2018-12-20. dead.
  3. Lipmann F, Kaplan NO . A common factor in the enzymatic acetylation of sulfanilamide and of choline . Journal of Biological Chemistry . 1946 . 162 . 3 . 743–744 . 10.1016/S0021-9258(17)41419-0 . free .
  4. Baddiley J, Thain EM, Novelli GD, Lipmann F . Structure of coenzyme A . Nature . 171 . 4341 . 76 . January 1953 . 13025483 . 10.1038/171076a0 . 630898 . 1953Natur.171...76B . free .
  5. Kresge N, Simoni RD, Hill RL . 2005-05-27. Fritz Lipmann and the Discovery of Coenzyme A. Journal of Biological Chemistry. en. 280. 21. e18. 0021-9258. 2017-10-24. 2019-04-12. https://web.archive.org/web/20190412153806/http://www.jbc.org/content/280/21/e18. dead.
  6. Lipmann F, Kaplan NO . Coenzyme for acetylation, a pantothenic acid derivative . The Journal of Biological Chemistry . 167 . 3 . 869–870 . March 1947 . 20287921 . 10.1016/S0021-9258(17)30973-0 . free .
  7. Lipmann F, Kaplan NO, Novelli GD, Tuttle LC, Guirard BM . Isolation of coenzyme A . The Journal of Biological Chemistry . 186 . 1 . 235–243 . September 1950 . 14778827 . 10.1016/S0021-9258(18)56309-2 . free .
  8. Web site: Fritz Lipmann – Facts . Nobelprize.org . Nobel Media AB . 2014 . 8 November 2017 .
  9. Web site: Vitamin B5 (Pantothenic acid). University of Maryland Medical Center. en. 2017-11-08. 2017-10-18. https://web.archive.org/web/20171018192121/http://www.umm.edu/health/medical/altmed/supplement/vitamin-b5-pantothenic-acid. dead.
  10. Web site: Pantothenic Acid (Vitamin B5): MedlinePlus Supplements. medlineplus.gov. en. 2017-12-10. 2017-12-22. https://web.archive.org/web/20171222155558/https://medlineplus.gov/druginfo/natural/853.html. dead.
  11. Leonardi R, Jackowski S . Biosynthesis of Pantothenic Acid and Coenzyme A . EcoSal Plus . 2 . 2 . April 2007 . 26443589 . 4950986 . 10.1128/ecosalplus.3.6.3.4 .
  12. Leonardi R, Zhang YM, Rock CO, Jackowski S . Coenzyme A: back in action . Progress in Lipid Research . 44 . 2–3 . 125–153 . 2005 . 15893380 . 10.1016/j.plipres.2005.04.001 .
  13. Evers C, Seitz A, Assmann B, Opladen T, Karch S, Hinderhofer K, Granzow M, Paramasivam N, Eils R, Diessl N, Bartram CR, Moog U . 6 . Diagnosis of CoPAN by whole exome sequencing: Waking up a sleeping tiger's eye . American Journal of Medical Genetics. Part A . 173 . 7 . 1878–1886 . July 2017 . 28489334 . 10.1002/ajmg.a.38252 . 27153945 .
  14. de Villiers M, Strauss E . Metabolism: Jump-starting CoA biosynthesis . Nature Chemical Biology . 11 . 10 . 757–758 . October 2015 . 26379022 . 10.1038/nchembio.1912 .
  15. Sibon OC, Strauss E . Coenzyme A: to make it or uptake it? . Nature Reviews. Molecular Cell Biology . 17 . 10 . 605–606 . October 2016 . 27552973 . 10.1038/nrm.2016.110 . 10344527 .
  16. Mouterde LM, Stewart JD . Isolation and Synthesis of One of the Most Central Cofactors in Metabolism: Coenzyme A . Organic Process Research & Development . 23 . 19–30 . 19 December 2018 . 10.1021/acs.oprd.8b00348. 92802641 .
  17. Elovson J, Vagelos PR . Acyl carrier protein. X. Acyl carrier protein synthetase . The Journal of Biological Chemistry . 243 . 13 . 3603–3611 . July 1968 . 4872726 . 10.1016/S0021-9258(19)34183-3 . free .
  18. Strickland KC, Hoeferlin LA, Oleinik NV, Krupenko NI, Krupenko SA . Acyl carrier protein-specific 4'-phosphopantetheinyl transferase activates 10-formyltetrahydrofolate dehydrogenase . The Journal of Biological Chemistry . 285 . 3 . 1627–1633 . January 2010 . 19933275 . 2804320 . 10.1074/jbc.M109.080556 . free .
  19. Book: Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P . 2002. Molecular Biology of the Cell . 4th . Chapter 2: How Cells Obtain Energy from Food. Garland Science . https://www.ncbi.nlm.nih.gov/books/NBK26882/. en.
  20. Shi L, Tu BP . Acetyl-CoA and the regulation of metabolism: mechanisms and consequences . Current Opinion in Cell Biology . 33 . 125–131 . April 2015 . 25703630 . 4380630 . 10.1016/j.ceb.2015.02.003 .
  21. Book: Berg JM, Tymoczko JL, Stryer L . 2002 . Biochemistry . Acetyl Coenzyme A Carboxylase Plays a Key Role in Controlling Fatty Acid Metabolism. https://www.ncbi.nlm.nih.gov/books/NBK22381/. en.
  22. Tsuchiya Y, Peak-Chew SY, Newell C, Miller-Aidoo S, Mangal S, Zhyvoloup A, Bakovic J, Malanchuk O, Pereira GC, Kotiadis V, Szabadkai G, Duchen MR, Campbell M, Cuenca SR, Vidal-Puig A, James AM, Murphy MP, Filonenko V, Skehel M, Gout I . 6 . Protein CoAlation: a redox-regulated protein modification by coenzyme A in mammalian cells . The Biochemical Journal . 474 . 14 . 2489–2508 . July 2017 . 28341808 . 5509381 . 10.1042/BCJ20170129 .
  23. Tsuchiya Y, Zhyvoloup A, Baković J, Thomas N, Yu BY, Das S, Orengo C, Newell C, Ward J, Saladino G, Comitani F, Gervasio FL, Malanchuk OM, Khoruzhenko AI, Filonenko V, Peak-Chew SY, Skehel M, Gout I . 6 . Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells . The Biochemical Journal . 475 . 11 . 1909–1937 . June 2018 . 29626155 . 5989533 . 10.1042/BCJ20180043 .
  24. Malanchuk OM, Panasyuk GG, Serbyn NM, Gout IT, Filonenko VV . 2015 . Generation and characterization of monoclonal antibodies specific to Coenzyme A . Biopolymers and Cell . EN . 31 . 3 . 187–192 . 10.7124/bc.0008DF . 0233-7657. free .
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  26. Tossounian MA, Zhang B, Gout I . The Writers, Readers, and Erasers in Redox Regulation of GAPDH . Antioxidants . 9 . 12 . 1288 . December 2020 . 33339386 . 7765867 . 10.3390/antiox9121288 . free .
  27. Yu BY, Tossounian MA, Hristov SD, Lawrence R, Arora P, Tsuchiya Y, Peak-Chew SY, Filonenko V, Oxenford S, Angell R, Gouge J, Skehel M, Gout I . 6 . Regulation of metastasis suppressor NME1 by a key metabolic cofactor coenzyme A . Redox Biology . 44 . 101978 . August 2021 . 33903070 . 8212152 . 10.1016/j.redox.2021.101978 .
  28. Baković J, Yu BY, Silva D, Chew SP, Kim S, Ahn SH, Palmer L, Aloum L, Stanzani G, Malanchuk O, Duchen MR, Singer M, Filonenko V, Lee TH, Skehel M, Gout I . 6 . A key metabolic integrator, coenzyme A, modulates the activity of peroxiredoxin 5 via covalent modification . Molecular and Cellular Biochemistry . 461 . 1–2 . 91–102 . November 2019 . 31375973 . 6790197 . 10.1007/s11010-019-03593-w .
  29. Tossounian MA, Baczynska M, Dalton W, Peak-Chew SY, Undzenas K, Korza G, Filonenko V, Skehel M, Setlow P, Gout I . 6 . Bacillus subtilis YtpP and Thioredoxin A Are New Players in the Coenzyme-A-Mediated Defense Mechanism against Cellular Stress . Antioxidants . 12 . 4 . 938 . April 2023 . 37107313 . 10136147 . 10.3390/antiox12040938 . free .
  30. Web site: Datasheet for free acid coenzyme A. Oriental Yeast Co., LTD..
  31. Web site: Datasheet for lithium salt coenzyme A. Oriental Yeast Co., LTD..

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