ChimerDB explained
| ChimerDB |
| Description: | fusion sequences. |
| Center: | Ewha Womans University, Seoul 120-750, Korea. |
| Laboratory: | Division of Molecular Life Sciences |
| Author: | Namshin Kim |
| Citation: | Kim & al. (2006) |
| Url: | http://genome.ewha.ac.kr/ChimerDB/ |
ChimerDB in computational biology is a database of fusion sequences.[1]
ChimerDB currently consists of three searchable datasets.[2]
- ChimerKB is a curated knowledge base of 1,066 fusion genes sourced from publicly available scientific literature.
- ChimerPub provides continuously updated descriptions on fusion genes text mined from publications.
- ChimerSeq is a database of RNA-seq data of fusion sequences downloaded from the TCGA data portal.
See also
References
- Kim. Namshin. Kim Pora . Nam Seungyoon . Shin Seokmin . Lee Sanghyuk . Jan 2006. ChimerDB--a knowledgebase for fusion sequences. Nucleic Acids Res.. 34. Database issue. D21–4. 16381848. 10.1093/nar/gkj019. 1347382 .
- Lee. Myunggyo. Lee. Kyubum. Yu. Namhee. Jang. Insu. Choi. Ikjung. Kim. Pora. Jang. Ye Eun. Kim. Byounggun. Kim. Sunkyu. 2017-01-04. ChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data mining. Nucleic Acids Research. 45. Database issue. D784–D789. 10.1093/nar/gkw1083. 0305-1048. 5210563. 27899563.
External links
- http://203.255.191.229:8080/chimerdbv31/mindex.cdb
