Cache domain explained

Symbol:Cache_1
Cache domain
Pfam:PF02743
Pfam Clan:CL0165
Interpro:IPR004010
Symbol:Cache_2
Cache domain (type 2)
Pfam:PF08269
Pfam Clan:CL0165
Interpro:IPR013163

In molecular biology, the cache domain is an extracellular protein domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria such as Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source.[1] The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions.[2]

Notes and References

  1. Anantharaman V, Aravind L . Cache - a signaling domain common to animal Ca(2+)-channel subunits and a class of prokaryotic chemotaxis receptors . Trends Biochem. Sci. . 25 . 11 . 535–7 . November 2000 . 11084361 . 10.1016/s0968-0004(00)01672-8.
  2. Anantharaman V, Koonin EV, Aravind L . Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains . J. Mol. Biol. . 307 . 5 . 1271–92 . April 2001 . 11292341 . 10.1006/jmbi.2001.4508 .