CXorf49 explained

CXorf49 is a protein, which in humans is encoded by the gene chromosome X open reading frame 49(CXorf49).

Gene

The CXorf49 gene has one alias CXorf49B.[1] The recname A8MYA2 also refers to the protein coded by CXorf49 or CXorf49B.[2]

CXorf49 is located on the X chromosome at Xq13.1. It is 3912 base pairs long and the gene sequence has 6 exons.[3] CXorf49 has one protein coding transcript.[4]

Protein

The protein has 514 amino acids and a molecular mass of 54.4 kDa.[5] The isoelectric point is 9.3. Compared to other human proteins CXorf49 is glycine- and proline-rich, but the protein has lower levels of asparagine, isoleucine, tyrosine and threonine(Statistical Analysis of Protein Sequences, SAPS [6]).

Domains

The domain of unknown function, DUF4641, is almost the entire protein. It is 433 amino acids long, from amino acid 80 until amino acid number 512.[7] DUF4641 is a part of pfam15483.[8] The domain is proline- and arginine-rich, but DUF4641 has lower levels of isoleucine, tyrosine and threonine compared to other proteins in human (Analysis of Protein Sequences, SAPS). DUF4641 has an unusual spacing between lysine residues and positive charged amino acids (Analysis of Protein Sequences, SAPS).

Post-translation modifications

CXorf49 is predicted to have several post-translational sites. This include sites for N-acetyltransferase (NetAcet 1-[9]), glycation of ε amino groups of lysines (NetGlycate 1.0[10]), mucin type GalNAc O-glycosylation (NetOglyc 4.0[11]), phosphorylation (NetPhos 2.0[12]), sumoylation (SUMOplot Analysis Program[13]) and O-ß-GlcNAc attachment(YinOYang WWW[14]).

Subcellular localization

The CXorf49 protein has been predicted to be located in the cell nucleus (PSORT II [15]).

Expression

Promoter region

The promoter region of CXorf49 is located between base pair 71718051 and 71718785 on the minus strand of the X chromosome and it is 735 bp long (Genomatix’s ElDorado program[16]). One of the most frequent transcription factor binding-sites in the promoter region are sites for Y-box binding factor.

Expression

Though expression of CXorf49 is very low in human cells, is it somewhat higher in connective tissues, testis and uterus(NCBI-Unigene [17]).

Interactions

The protein CXorf49 has not yet been shown to interact with other proteins (PSICQUIC[18]).

CXorf49 is found to be one of the components of a small group of the HL-60 cell proteome that were most prone to form 4-Hydroxy-2-nonenal(HNE) adducts, upon exposure to nontoxic (10 μM) HNE concentrations, along with heat shock 60 kDa protein 1.[19]

Homology

Using BLAST[20] no orthologs for CXorf49 are found in single celled organisms, fungi or plants whose genomes have been sequenced. For multicellular organisms orthologs are found in mammals. The table below show a selection of the mammal orthologs. They are listed after time of divergence from human.

Genus and species nameCommon nameAccession Number Sequence length Identity to human protein
Pan troglodytesChimpanzeeXP_001137982514 aa98 %
Callithrix jacchusCommon marmosetXP_008987719487 aa65 %
Galeopterus variegatusMalayan flying lemurXP_008574823525 aa54 %
Tupaia chinensisChinese tree shrewXP_006168003527 aa35 %
Chinchilla lanigeraLong-tailed chinchillaXP_013358263307 aa49 %
Mus musculusHouse mouseNP_081944513 aa36 %
Canis lupus familiarisDogXP_850392526 aa54 %
Odobenus rosmarus divergensPacific walrusXP_012422579530 aa51 %
Mustela putorius furoFerretXP_004777306544 aa50 %
Lipotes vexilliferChinese river dolphinXP_007452050529 aa45 %
Ovis areisSheepXP_004022229536 aa45 %
Capra hircusGoatXP_005700711538 aa44 %
Myotis lucifugusLittle brown batXP_006083036500 aa42 %
Myotis davidiiDavid's myotisXP_006759573495 aa42 %
Bos taurusCattleNP_001092664534 aa42 %
Equus asinusAsinusXP_014707878723 aa42 %
Trichechus manatus latirostrisFlorida manateeXP_012415455505 aa44 %
Dasypus novemcinctusNine-banded armadilloXP_004475873497 aa44 %
Orycteropus afer aferAardvarkXP_007957133477 aa38 %

Phylogeny

CXorf49 has developed from aardvarks, to the human protein over 105.0 million years.

Notes and References

  1. Web site: Homo sapiens chromosome X open reading frame 49 (CXorf49), mRNA - Nucleotide - NCBI . Ncbi.nlm.nih.gov . 2015-09-28 . 2016-04-28.
  2. Web site: RecName: Full=Uncharacterized protein CXorf49 - Protein - NCBI . Ncbi.nlm.nih.gov . 2015-09-28 . 2016-04-28.
  3. Web site: CXorf49 chromosome X open reading frame 49 [Homo sapiens (human)] - Gene - NCBI |publisher=Ncbi.nlm.nih.gov |date= |accessdate=2016-04-28].
  4. Web site: Gene & protein Summary: cxorf49 . Ebi.ac.uk . 2016-04-28.
  5. Web site: CXorf49 Gene(Protein Coding) Chromosome X Open Reading Frame 49 . GeneCards . 2016-04-28.
  6. Web site: SDSC Biology Workbench. seqtool.sdsc.edu. 2016-05-06. https://web.archive.org/web/20030811031200/http://seqtool.sdsc.edu/. 2003-08-11. dead.
  7. Web site: uncharacterized protein CXorf49 [Homo sapiens] - Protein - NCBI |publisher=Ncbi.nlm.nih.gov |date=2015-09-28 |accessdate=2016-04-28].
  8. Web site: NCBI CDD Conserved Protein Domain DUF4641. www.ncbi.nlm.nih.gov. 2016-05-06.
  9. Web site: NetAcet 1.0 Server . Cbs.dtu.dk . 2016-04-28.
  10. Web site: NetGlycate 1.0 Server . Cbs.dtu.dk . 2016-04-28.
  11. Web site: NetOGlyc 4.0 Server . Cbs.dtu.dk . 2013-05-15 . 2016-04-28.
  12. Web site: NetPhos 2.0 Server . Cbs.dtu.dk . 2016-04-28.
  13. Web site: SUMOplot Analysis Program . Abgent . 2016-04-28.
  14. Web site: YinOYang 1.2 Server . Cbs.dtu.dk . 2016-04-28.
  15. http://psort.hgc.jp/cgi-bin/runpsort.pl{{dead link|date=July 2017 |bot=InternetArchiveBot |fix-attempted=yes }}
  16. Web site: Genomatix's ElDorado . 2016-05-06 . 2021-04-03 . https://web.archive.org/web/20210403193429/https://www.genomatix.de/cgi-bin/sessions/login.pl?s=8c771b65c6f17d64d3beb90fb2fb4191 . dead .
  17. Web site: EST Profile - Hs.632817 . Ncbi.nlm.nih.gov . 2016-04-28.
  18. Web site: PSIQUIC. https://web.archive.org/web/20141217140030/http://www.ebi.ac.uk/Tools/webservices/psicquic/view/home.xhtml. live. 2014-12-17.
  19. Arcaro. Alessia. Daga. Martina. Cetrangolo. Giovanni Paolo. Ciamporcero. Eric Stefano. Lepore. Alessio. Pizzimenti. Stefania. Petrella. Claudia. Graf. Maria. Uchida. Koji. Mamone. Gianfranco. Ferranti. Pasquale. Ames. Paul R. J.. Palumbo. Giuseppe. Barrera. Giuseppina. Gentile. Fabrizio. Generation of Adducts of 4-Hydroxy-2-nonenal with Heat Shock 60 kDa Protein 1 in Human Promyelocytic HL-60 and Monocytic THP-1 Cell Lines. Oxidative Medicine and Cellular Longevity. 2015. 2015. 296146. 10.1155/2015/296146. 26078803. 4452872. free.
  20. http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome Protein BLAST