C11orf91 Explained

Chromosome 11 open reading frame 91, or C11orf91 is a protein which in humans is encoded by the C11orf91 gene.

Gene

The C11orf91 gene consists of 5159 nucleotides with an mRNA of approximately 836 base pairs.[1] [2]

Notes and References

  1. https://www.ncbi.nlm.nih.gov/nuccore/NM_001166692.2 Human chromosome 11 open reading frame 91 (C11orf91), mRNA.
  2. https://www.genecards.org/cgi-bin/carddisp.pl?gene=C11orf91 C11orf91 Gene
  3. https://www.ncbi.nlm.nih.gov/nuccore/NM_001166692.2 Homo sapiens chromosome 11 open reading frame 91 (C11orf91), mRNA
  4. http://www.unafold.org/mfold/applications/rna-folding-form.php RNA Folding Form Tool.
  5. http://rbpdb.ccbr.utoronto.ca/ Predict Binding Sites from PWMs Tool.
  6. https://www.ebi.ac.uk/Tools/seqstats/saps/ Statistical Analysis of Protein Sequences Tool.
  7. https://www.ncbi.nlm.nih.gov/nuccore/NM_001166692.2 Homo sapiens chromosome 11 open reading frame 91 (C11orf91), mRNA
  8. https://www.phosphosite.org/proteinAction.action?id=3708942&showAllSites=true PhosphoSitePlus Tool.
  9. https://www.thermofisher.com/antibody/product/C11orf91-Antibody-Polyclonal/PA5-65463 C11orf91 Polyclonal Antibody
  10. https://www.proteinatlas.org/ENSG00000205177-C11orf91/subcellular The Human Protein Atlas entry on C11orf91.
  11. https://www.biogem.org/tool/chou-fasman/ Chou & Fasman Secondary Structure Prediction Server.
  12. https://www.compbio.dundee.ac.uk/jpred4/index.html JPred 4: A Protein Secondary Structure Prediction Server.
  13. https://predictprotein.org/ Predict Protein Tool.
  14. https://toolkit.tuebingen.mpg.de/jobs/2298077 Ali2D Tool.
  15. https://zhanggroup.org/I-TASSER/ I-TASSER Tool.
  16. https://alphafold.ebi.ac.uk/entry/Q3C1V1 AlphaFold Protein Structure Database.
  17. https://structure.ncbi.nlm.nih.gov/Structure/icn3d/ NCBI Structure iCN3D.
  18. https://myhits.sib.swiss/cgi-bin/motif_scan MyHits Motif Scan Tool.
  19. https://services.healthtech.dtu.dk/services/NetPhos-3.1/ DTU Health Tech NetPhos 3.1 Tool.
  20. https://gps.biocuckoo.cn/online.php GPS 6.0.
  21. https://www.phosphosite.org/proteinAction.action?id=3708942&showAllSites=true PhosphoSitePlus Tool.
  22. https://blast.ncbi.nlm.nih.gov/Blast.cgi (National Center for Biotechnology Information) Basic Local Alignment Search Tool
  23. https://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr11%3A33697958%2D33701421&hgsid=1802580390_JnCQVT8CKdBW5VDRS2lIeccUFNwI UCSC Genome Browser entry on Human GRCh38/hg38.
  24. https://www.ncbi.nlm.nih.gov/gene/100131378/ortholog/?scope=7776&term=C11orf91 NCBI (National Center for Biotechnology Information) entry on C11orf91 - chromosome 11 open reading frame 91 NCBI Orthologs
  25. https://www.ncbi.nlm.nih.gov/protein/NP_001160164.1 Uncharacterized protein C11orf91 [Homo sapiens<nowiki>]]. NCBI Protein. Retrieved 23 September 2023. The C11orf91 protein contains a domain of unknown function, DUF5529, that spans nearly the entire protein. RBMX protein binding sites were found to be highly conserved in several structures of human C11orf91 3'UTR and 5' UTR.[4] [5] C11orf91 is rich in serine and proline and poor in valine and asparagine.[6] There is a proline rich region found in the middle of the C11orf91.[7] The human C11orf91 protein is approximately 20 kDal and has an isoelectric point around 9.[8]

    Localization

    Human C11orf91 protein is predicted to be localized in vesicles.[9] [10]

    Structure

    C11orf91 has two helices located near the C-terminus and no beta sheets.[11] [12] [13] [14] [15] [16] [17]

    Post-translational modifications

    C11orf91 has a predicted Protein kinase C (PKC) phosphorylation site, Casein kinase 2 (CK2) phosphorylation site, amidation site, and two predicted serine phosphorylation sites, see Conceptual Translation for post-translational modification site locations.[18] [19] [20] [21]

    Evolution

    There are no paralogs of the human C11orf91 protein.[22] [23] The human C11orf91 protein has several orthologs found across eight categories of jawed vertebrates including: aves, testudines, alligators, reptiles, mammals, amphibians, lungfishes, and cartilaginous fishes.[24]

    Select Orthologs of C11orf91
    Genus and Species Common Name Taxonomic Group Median Date of Divergence (MYA) Accession Number Sequence Length (aa) Sequence Identity to Human Protein (%) Sequence Similarity to Human Protein (%)
    Homo sapeins Human Primates 0 XP_016872542.1 193 100 100
    Mus musculus Mouse Rodentia 87 NP_080910.1 194 81.7 84.3
    Equus caballus Horse Odd-toed ungulates 94 XP_023509601.1 191 87 89.1
    Choloepus didactylus Southern two-toed sloth Pilosa 99 XP_037697448.1 191 86.2 87.2
    Phascolarctos cinereus Koala Diprotodontia 160 XP_020819588.1 212 67.1 70.8
    Gopherus evgoodei Goode's thornscrub tortoise Testudines 319 XP_030417986.1 163 46.5 55.5
    Pogona vitticeps Central bearded dragon Squamata 319 XP_020663275.1 168 44.3 54.7
    Sphaerodactylus townsendi Townsend's least gecko Squamata 319 XP_048340539.1 168 43 51.7
    Alligator mississippiensis American alligator Crocodilia 319 XP_059577366.1 157 41.4 51.2
    Tyto alba Barn owl Strigiformes 319 XP_042641164.1 143 34.5 41.5
    Calypte anna Hummingbird Apodiformes 319 XP_030307391.1 146 32.3 44.6
    Gymnogyps californianus California condor Accipitriformes 319 XP_050754406.1 142 32.2 38.8
    Dryobates pubescens Downy woodpecker Piciformes 319 XP_054027854.1 143 32.1 43.5
    Dromaius novaehollandiae Emu Struthioniformes 319 XP_025967391.1 209 29.6 35.8
    Rhinatrema bivittatum Two-lined caecilians Caecilidae 352 XP_029438087.1 144 45.1 57
    Pleurodeles waltl Iberian ribbed newt Caudata 352 KAJ1177600.1 140 40.1 52.3
    Hyla sarda Sardinian tree frog Anura 352 XP_056384394.1 153 27.4 37
    Protopterus annectens West African lungfish Lepidosireniformes 408 XP_043915714.1 173 28.5 37.4
    Pygocentrus nattereri Red-bellied piranha Characiformes 429 XP_017546298.1 147 25.9 37.1
    Amblyraja radiata Thorny skate Rajiformes 462 XP_032894439.1 136 37.7 46.2

    References

  26. https://www.ncbi.nlm.nih.gov/protein/NP_001160164.1 Uncharacterized protein C11orf91 [Homo sapiens<nowiki>]]. NCBI Protein. Retrieved 23 September 2023. There is one exon found in the C11orf91 gene.

    mRNA

    The cytogenetic band location of C11orf91 is 11p13 and is located on the minus strand of the DNA .[2]

    Conceptual translation

    Annotated depiction of the C11orf91 mRNA and amino acid protein sequences.

    Protein

    The C11orf91 gene encodes a protein that is 193 amino acids in length.[3] [4]

This article is licensed under the GNU Free Documentation License. It uses material from the Wikipedia article "C11orf91".

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