Checkerboard score explained

In biodiversity studies, the checkerboard score or C-score is a statistic which determines the randomness of the distribution of two or more species through a collection of biomes. The statistic, first published by Stone and Roberts in 1990,[1] expands on the earlier work of Diamond[2] that defined a notion of "checkerboard distributions" as an indicator of species competition.

A low c-score indicates a higher randomness, i.e. a greater likelihood that the distribution of one species has not been directly affected by the presence of other species.

Definition and calculation

Given two species sp1, sp2 and n islands, an incident matrix is built.In the

2 x n

incident matrix, each row represents one of the two species and each column represents a different island.The matrix is then filled with each cell being set to either 0 or 1. Cell with the value of 0 means that a given species doesn't exist in the given island whilst the value of 1 means that the species do exist in the given island.

The calculation of the co-occurrence of two species sp1, sp2 in the given set of islands is done as follows:

Cij=(ri-Sij)(rj-Sij)

- C-score for the two species sp1, sp2 in the given set of islands

- The number of co-occurrences of sp1, sp2

- Number of islands in which sp1 has 1

- Number of islands in which sp2 has 1

The checkerboard score (c-score) for the colonisation pattern is then calculated as the mean number of checkerboard units per species-pair in the community:

For M species, there are species-pairs, so C-score is calculated:

C

M
=\sum
j=0

\sumi<jCij/P

The C-score is sensitive to the proportion of islands that are occupied, thereby confounding comparisons between matrices or sets of species pairs within them. An extension of the C-score therefore standardizes by the number of islands each species-pair occupies using:[3]

Cij=(ri-Sij)(rj-Sij)/(ri+rj-Sij)

Notes and References

  1. Stone. Lewis. Roberts. Alan. The checkerboard score and species distributions. Oecologia. 85. 1. 1990. 74–79. 0029-8549. 10.1007/BF00317345. 28310957. 1990Oecol..85...74S. 14197156 .
  2. Book: Diamond, JM . 1975 . Assembly of species communities . Cody. ML . Diamond. JM . Ecology and evolution of communities . registration. Belknap Press . 342–444.
  3. Novak. Mark. Moore. Jonathan W.. Leidy. Robert A.. Nestedness patterns and the dual nature of community reassembly in California streams: a multivariate permutation-based approach. Global Change Biology. 17. 2011. 12. 3714–3723. 10.1111/j.1365-2486.2011.02482.x. 2011GCBio..17.3714N. 15142785 .