Butyrate kinase explained

Butyrate kinase
Ec Number:2.7.2.7
Cas Number:37278-14-1
Go Code:0047761

In enzymology, a butyrate kinase is an enzyme that catalyzes the chemical reaction

ADP + butyryl-phosphate

\rightleftharpoons

ATP + butyrate

Thus, the two substrates of this enzyme are ADP and butyryl-phosphate, whereas its two products are ATP and butyrate.

This enzyme belongs to the family of transferases, specifically those transferring phosphorus-containing groups (phosphotransferases) with a carboxy group as acceptor. The systematic name of this enzyme class is ATP:butanoate 1-phosphotransferase. This enzyme participates in butyrate metabolism.

This enzyme is transcribed from the gene buk,[1] [2] which is part of the ASKHA super family.[3]

Mechanism

ADP + butyryl-phosphate

\rightleftharpoons

ATP + butyrate

The reaction above is a nucleophilic substitution reaction. An electron pair from an oxygen on ADP attacks the phosphorus on butyryl-phosphate, breaking the bond between phosphorus and oxygen to create ATP and butyrate. The arrow-pushing mechanism is shown above.

The reaction can also occur in the reverse direction, as shown below, under certain fermentation conditions.[4] [5]

ATP + butyrate

\rightleftharpoons

ADP + butyryl-phosphate

Structure

As of 2015, two structures have been solved for this class of enzymes, with PDB accession codes and . The study conducted to solve 1SAZ was retracted in 2012 due to fact that the data was used without the permission of the sole custodian.[6]

The investigators of the study that produced the crystallization of 1X9J hypothesized that the enzyme was an octomer formed from dimers. The crystallized form has a radius of 7.5 nm which corresponded to a molecular weight of 380 kDa. Because a monomer of buk2 is about 43 kDa, it was believed that the enzyme itself was either an octomer or a nonamer. Investigators hypothesized that the enzyme was an octomer since most of the proteins within the ASHKA super family form dimers.

Function

Butyrate kinase is active within the human colon. To form butyrate, two molecules of acetyl-CoA are combined and reduced to produce butyryl-CoA. Butyryl CoA is then converted into butyrate through two reactions. The first reaction converts butyryl-CoA to butyryl-phosphate by using the phosphotransbutyrylase enzyme. Butyryl-phosphate is then converted into butyrate by using butyrate kinase and in the process, releases ATP.[7] [8]

Butyrate plays an important role within cells as it affects cellular proliferation, differentiation, and apoptosis.[9] [10]

Because of the significant roles that butyrate plays within cells, it is essential that butyrate kinase is functioning correctly, which can be done through regulation of the enzyme. One study has previously found that butyrate kinase is not regulated by its end-products or other acids such as acetic acid,[11] but more studies need to be conducted to further elucidate the regulation of butyrate kinase.

Disease relevance

As stated in the previous section, butyrate is involved with multiple cellular functions. Because of its involvement with these functions, it is hypothesized that butyrate can act as a protective agent against colon cancer and various inflammatory bowel diseases.[12] Butyrate plays a key role in colon cancer by switching its role concerning cellular proliferation and apoptosis depending on the state and conditions of the cell. Butyrate also possesses anti-inflammatory effects to decrease colonic inflammation such as ulcerative colitis. One study specifically identified the transcription factor NF-kB as a target of butyrate to decrease the number of pro-inflammatory cytokines.

Further reading

Notes and References

  1. Louis P, Duncan SH, McCrae SI, Millar J, Jackson MS, Flint HJ . Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon . Journal of Bacteriology . 186 . 7 . 2099–106 . April 2004 . 15028695 . 374397 . 10.1128/jb.186.7.2099-2106.2004 .
  2. Walter KA, Nair RV, Cary JW, Bennett GN, Papoutsakis ET . Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824 . Gene . 134 . 1 . 107–11 . November 1993 . 8244020 . 10.1016/0378-1119(93)90182-3 .
  3. Diao J, Cooper DR, Sanders DA, Hasson MS . Crystallization of butyrate kinase 2 from Thermotoga maritima mediated by vapor diffusion of acetic acid . Acta Crystallographica D . 59 . Pt 6 . 1100–2 . June 2003 . 12777787 . 10.1107/s0907444903007832 .
  4. Wiesenborn DP, Rudolph FB, Papoutsakis ET . Phosphotransbutyrylase from Clostridium acetobutylicum ATCC 824 and its role in acidogenesis . Applied and Environmental Microbiology . 55 . 2 . 317–22 . February 1989 . 10.1128/AEM.55.2.317-322.1989 . 2719475 . 184108 .
  5. Book: Rogers. P. Advances in Applied Microbiology Volume 31. Genetics and biochemistry of Clostridium relevant to development of fermentation processes. Advanced Application of Microbiology. 1986. 31. 1–60. 10.1016/s0065-2164(08)70438-6. 9780120026319.
  6. Retraction. Crystal structure of butyrate kinase 2 from Thermotoga maritima, a member of the ASKHA superfamily of phosphotransferases . Journal of Bacteriology . 194 . 11 . 3033 . June 2012 . 22582386 . 3370641 . 10.1128/jb.00549-12 . Diao . J. . Hasson . M. S. .
  7. Pryde SE, Duncan SH, Hold GL, Stewart CS, Flint HJ . The microbiology of butyrate formation in the human colon . FEMS Microbiology Letters . 217 . 2 . 133–9 . December 2002 . 12480096 . 10.1111/j.1574-6968.2002.tb11467.x . free .
  8. Bennett. George. Rudolph. Frederick. The central metabolic pathway from acetyl-CoA to butyryl-CoA in Clostridium acetobutylicum. FEMS Microbiology Reviews. 1995. 17. 3. 241–249. 10.1016/0168-6445(95)00011-Z. free.
  9. Wächtershäuser A, Stein J . Rationale for the luminal provision of butyrate in intestinal diseases . European Journal of Nutrition . 39 . 4 . 164–71 . August 2000 . 11079736 . 10.1007/s003940070020 . 43828892 .
  10. Sengupta S, Muir JG, Gibson PR . Does butyrate protect from colorectal cancer? . Journal of Gastroenterology and Hepatology . 21 . 1 Pt 2 . 209–18 . January 2006 . 16460475 . 10.1111/j.1440-1746.2006.04213.x . 7830703 . free .
  11. Ballongue. Jean. Amine. Jamel. Gay. Peptitdemange. Gay. Robert. Regulation of acetate kinase and butyrate kinase by acids in Clostridium acetobutylicum. FEMS Microbiology Letters. July 1986. 35. 2–3. 295–301. 10.1111/j.1574-6968.1986.tb01546.x. free.
  12. Segain JP, Raingeard de la Blétière D, Bourreille A, Leray V, Gervois N, Rosales C, Ferrier L, Bonnet C, Blottière HM, Galmiche JP . Butyrate inhibits inflammatory responses through NFkappaB inhibition: implications for Crohn's disease . Gut . 47 . 3 . 397–403 . September 2000 . 10940278 . 1728045 . 10.1136/gut.47.3.397 .