Bioinformatics Open Source Conference Explained

Bioinformatics Open Source Conference
Prev:BOSC 2022
Next:BOSC 2023
Frequency:Annually
Location:Madison, United States (2022)
Attendance:~100
Organised: Nomi L. Harris, Karsten Hokamp (2021 chairs)[1]
Member:Open Bioinformatics Foundation

The Bioinformatics Open Source Conference (BOSC) is an academic conference on open-source programming and other open science practices in bioinformatics, organised by the Open Bioinformatics Foundation. The conference has been held annually since 2000 and is run as a two-day meeting either within Intelligent Systems for Molecular Biology (ISMB) conference or as a joint conference with the Galaxy community.

Program

The conference is held as a single track consisting of presentations, poster sessions and two keynote talks by people of influence in open-source bioinformatics.[2]

Since 2010, an informal two-day "CollaborationFest" (formerly Codefest) has been held directly preceding the conference.[3] [4]

History

National Institutes of Health Associate Director for Data Science Philip Bourne and C. Titus Brown gave keynote talks at BOSC 2014.[5]

BOSC 2016 was organized in Orlando, Florida from July 8–9 before the main ISMB conference.[6]

In 2018 and 2020, BOSC partnered with Galaxy to organize two joint conferences called GCCBOSC and Bioinformatics Community Conference (BCC) respectively.[7] The event in 2018 was held in Portland, Oregon.[8] The BCC in 2020 took place online with two time schedules for eastern/western time zones[9]

Since 2021, BOSC has been taking place within the ISMB conferences again. In 2023 BOSC took place in Lyon, France between July 24-28 as part of the ISMB/ECCB conference.

Past conferences

As of January 2024, there have been 24 BOSC held around the world, of those 20 were purely in-person conferences, 2 purely remote due to the COVID-19 pandemic and one that was organized as a hybrid meeting.[10]

!Year!Conference partner!Location!Keynote speakers
2023ISMBLyon, FranceJoseph M. Yracheta, Sara El-Gebali
2022ISMBHybrid: Madison, WI and onlineJason Williams, Melissa Haendel
2021ISMBOnline (would have been Lyon)Christie Bahlai, Lara Mangravite, Thomas Hervé Mboa Nkoudou
2020GCCOnline (would have been Toronto)Lincoln Stein, Abigail Cabunoc Mayes
2019ISMBBasel, SwitzerlandNicola Mulder
2018GCCPortland, ORFernando Pérez, Tracy Teal
2017ISMBPrague, Czech RepublicMad Price Ball, Nick Loman
2016ISMBOrlando, FLJennifer Gardy, Steven Salzberg
2015ISMBDublin, IrelandEwan Birney, Holly Bik
2014ISMBBoston, MAPhilip Bourne, Titus Brown
2013ISMBBerlin, GermanySean Eddy, Cameron Neylon
2012ISMBLong Beach, CAJonathan Eisen, Carole Goble
2011ISMBVienna, AustriaLawrence Hunter, Matt Wood
2010ISMBBoston, MAGuy Coates, Ross Gardler
2009ISMBStockholm, SwedenRobert Hanmer, Alan Ruttenberg
2008ISMBToronto, CanadaJulian Lombardi
2007ISMBVienna, AustriaCarole Goble
2006ISMBFortaleza, BrasilAmos Bairoch, Alberto M.R. Davila
2005ISMBDetroit, MIHilmar Lapp
2004ISMBGlasgow, ScotlandWolfgang Huber
2003ISMBBrisbane, Australia-
2002ISMBEdmonton, CanadaEwan Birney, Michael Eisen, Winston Hide
2001ISMBCopenhagen, DenmarkSteven Brenner
2000ISMBSan Diego, CATim O'Reilly, Lincoln Stein

Notes and References

  1. Web site: BOSC 2021 – Open Bioinformatics Foundation. November 22, 2022.
  2. Harris. N. L.. Cock. P.. Chapman. B.. Goecks. J.. Hotz. H.-R.. Lapp. H.. The Bioinformatics Open Source Conference (BOSC) 2013. Bioinformatics. July 14, 2014. 25024288. 10.1093/bioinformatics/btu413. 31. 2. 299–300. 4287938.
  3. Web site: Codefest - Open Bioinformatics Foundation. www.open-bio.org. July 20, 2014.
  4. Möller. Steffen. Afgan. Enis. Banck. Michael. Cock. Peter J. A.. Kalas. Matus. Kajan. Laszlo. Prins. Pjotr. Quinn. Jacqueline. Sallou. Olivier. Strozzi. Francesco. Seemann. Torsten. Tille. Andreas. Valls Guimera. Roman. Katayama. Toshiaki. Chapman. Brad. Sprints, Hackathons and Codefests as community gluons in computational biology. EMBnet.journal. October 14, 2013. 19. B. 40. 10.14806/ej.19.B.726. free.
  5. Web site: BOSC 2014 Schedule - Open Bioinformatics Foundations. www.open-bio.org. July 20, 2014.
  6. Web site: BOSC 2016 – Open Bioinformatics Foundation. Open Bio.
  7. Web site: About BOSC - Open Bioinformatics Foundation. November 22, 2022.
  8. Web site: GCCBOSC 2018 - Open Bioinformatics Foundation. November 22, 2022.
  9. Web site: Bioinformatics Community Conference. November 22, 2022.
  10. Web site: OBF » About BOSC » About BOSC . 2022-11-23 . en-US.