BioJS explained

BioJS
Released:2012
Programming Language:JavaScript
Genre:Bioinformatics
License:Apache 2

BioJS is an open-source project for bioinformatics data on the web.[1] Its goal is to develop an open-source library of JavaScript components to visualise biological data.[2] BioJS develops and maintains small building blocks (components) which can be reused by others. For a discovery of available components, BioJS maintains a registry .

History

The first version of BioJS was released in 2012 by John Gomez Carvajal. It was developed as a JavaScript library of web components to represent biological data in web applications. Version 2.0 included a complete redesign of the library and was released in 2014 as a Google Summer of Code project led by Manuel Corpas and developed by David Dao and Sebastian Wilzbach. Since then over 100 people contributed to the project. Currently more than 150 components are available in the BioJS registry.

Selected list of published components

Institutions using BioJS

See also

Notes and References

  1. Corpas . Manuel Corpas (Scientist). Jimenez . Rafael . Carbon . Seth J . García . Alex . Garcia . Leyla . Goldberg . Tatyana . Gomez . John . Kalderimis . Alexis . Lewis . Suzanna E . 2014 . BioJS: an open source standard for biological visualisation – its status in 2014 . F1000Research . 25075290 . 10.12688/f1000research.3-55.v1 . 2046-1402 . Mulvany . Ian . Pawlik . Aleksandra . Rowland . Francis . Salazar . Gustavo . Schreiber . Fabian . Sillitoe . Ian . Spooner . William H . Thanki . Anil . Villaveces . José M . Yachdav . Guy . Hermjakob . Henning. 3 . 55 . 4103492 . free .
  2. Web site: BioJS Vision and Mission . BioJS . https://web.archive.org/web/20140810063209/http://biojs.net/our_mission.html . 10 August 2014 . dead . 29 August 2014.
  3. Kalderimis. Alexis. Stepan. Radek. Sullivan. Julie. Lyne. Rachel. Lyne. Michael. Micklem. Gos. BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs. F1000Research. 2014. 3 . 51 . 2046-1402. 24627804 . 10.12688/f1000research.3-51.v1. 3945768 . free .
  4. Thanki. Anil S.. Caim. Shabhonam. Corpas. Manuel. Manuel Corpas (Scientist). Davey. Robert P.. DNAContentViewer a BioJS component to visualise GC/AT Content. F1000Research. 2014. 3 . 54 . 2046-1402. 10.12688/f1000research.3-54.v1. free.
  5. Garcia. Leyla. Yachdav. Guy. Martin. Maria-Jesus. FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences. F1000Research. 2014. 3 . 47 . 2046-1402. 24741440 . 10.12688/f1000research.3-47.v2. 3983936 . free.
  6. Yachdav. Guy. Hecht. Maximilian. Pasmanik-Chor. Metsada. Yeheskel. Adva. Rost. Burkhard. HeatMapViewer: interactive display of 2D data in biology. F1000Research. 2014. 3 . 48 . 2046-1402. 24860644. 10.12688/f1000research.3-48.v1 . 4023661. free.
  7. Kalderimis. Alexis. Stepan. Radek. Sullivan. Julie. Lyne. Rachel. Lyne. Michael. Micklem. Gos. BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints. F1000Research. 2014. 3 . 45 . 2046-1402. 10.12688/f1000research.3-45.v1. free.
  8. Kalderimis. Alexis. Stepan. Radek. Sullivan. Julie. Lyne. Rachel. Lyne. Michael. Micklem. Gos. BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints. F1000Research. 2014. 3 . 46 . 2046-1402. 10.12688/f1000research.3-46.v1. free.
  9. Villaveces. Jose M.. Jimenez. Rafael C.. Habermann. Bianca H.. KEGGViewer, a BioJS component to visualize KEGG Pathways. F1000Research. 2014. 3 . 43 . 2046-1402. 24715980. 10.12688/f1000research.3-43.v1. 3954160 . free.
  10. Salazar. Gustavo A.. Meintjes. Ayton. Mulder. Nicola. PPI layouts: BioJS components for the display of Protein-Protein Interactions. F1000Research. 2014. 3 . 50 . 2046-1402. 25075288 . 10.12688/f1000research.3-50.v1 . 4103490 . free.
  11. Villaveces. Jose M.. Jimenez. Rafael C.. Habermann. Bianca H.. PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers. F1000Research. 2014. 3 . 44 . 2046-1402. 25075287 . 10.12688/f1000research.3-44.v1. 4097353. free.
  12. Gomez. John. Jimenez. Rafael. Sequence, a BioJS component for visualising sequences. F1000Research. 2014. 3 . 52 . 2046-1402. 25075289. 10.12688/f1000research.3-52.v1. 4103491. free.
  13. Thanki. Anil S.. Jimenez. Rafael C.. Kaithakottil. Gemy G.. Corpas. Manuel. Manuel Corpas (Scientist). Davey. Robert P.. wigExplorer, a BioJS component to visualise wig data. F1000Research. 2014. 3 . 53 . 2046-1402. 10.12688/f1000research.3-53.v2. 27781080 . 5054804 . free.
  14. Schreiber. Fabian. treeWidget: a BioJS component to visualise phylogenetic trees. F1000Research. 2014. 3 . 49 . 2046-1402. 10.12688/f1000research.3-49.v1. free.

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