The third Baltimore Bays were a soccer team based in Baltimore, Maryland that played in the USISL. They became the Eastern Shore Sharks in 1998 when they moved to Salisbury, Maryland.
| Year | Division | League | Reg. Season | Playoffs | Open Cup | |
|---|---|---|---|---|---|---|
| 1993 | N/A | USISL | 7th, Atlantic | Did not qualify | Did not enter | |
| 1993/94 | N/A | USISL Indoor | 1st, Northern | 3rd Place | N/A | |
| 1994 | 3 | USISL | 8th, Atlantic | Did not qualify | Did not enter | |
| 1994/95 | N/A | USISL Indoor | 1st, North/South | Semifinals | N/A | |
| 1995 | 3 | USISL Pro League | 6th, Coastal | Did not qualify | Did not qualify | |
| 1995/96 | N/A | USISL Indoor | 1st, Northeast | Champion | N/A | |
| 1996 | 3 | USISL Pro League | 7th, Northeast | Did not qualify | Did not qualify | |
| 1996/97 | N/A | USISL I-League | 1st, East | Champion | N/A | |
| 1997 | 3 | USISL D-3 Pro League | 3rd, Mid-Atlantic | Quarterfinals | Did not qualify | |
| 1997/98 | N/A | USISL I-League | 1st | Champion | N/A |