Avizo (software) explained
Avizo (pronounce: ‘a-VEE-zo’) is a general-purpose commercial software application for scientific and industrial data visualization and analysis.
Avizo is developed by Thermo Fisher Scientific and was originally designed and developed by the Visualization and Data Analysis Group[1] at Zuse Institute Berlin (ZIB) under the name Amira. Avizo was commercially released in November 2007. For the history of its development, see the Wikipedia article about Amira.
Overview
Avizo is a software application which enables users to perform interactive visualization and computation on 3D data sets. The Avizo interface is modelled on the visual programming. Users manipulate data and module components, organized in an interactive graph representation (called Pool), or in a Tree view. Data and modules can be interactively connected together, and controlled with several parameters, creating a visual processing network whose output is displayed in a 3D viewer.
With this interface, complex data can be interactively explored and analyzed by applying a controlled sequence of computation and display processes resulting in a meaningful visual representation and associated derived data.
Application areas
Avizo has been designed to support different types of applications and workflows from 2D and 3D image data processing to simulations.It is a versatile and customizable visualization tool used in many fields:
- Scientific visualization[2]
- Materials Research[3] [4] [5] [6] [7] [8] [9]
- Tomography,[10] [11] [12] Microscopy,[13] [14] etc.
- Nondestructive testing,[15] Industrial Inspection,[16] [17] and Visual Inspection
- Computer-aided Engineering[18] [19] and simulation data post-processing
- Porous medium analysis[20] [21] [22] [23] [24] [25] [26]
- Civil Engineering[27]
- Seismic Exploration, Reservoir Engineering, Microseismic Monitoring, Borehole Imaging[28]
- Geology,[29] [30] [31] Digital Rock Physics (DRP),[32] [33] [34] Earth Sciences[35] [36] [37] [38] [39]
- Archaeology[40] [41]
- Food technology and agricultural science[42] [43] [44] [45]
- Physics, Chemistry[46]
- Climatology,[47] [48] [49] [50] Oceanography, Environmental Studies [51]
- Astrophysics
Features
Data import:
- 2D and 3D image stack and volume data: from microscopes (electron, optical),[52] [53] [54] [55] [56] [57] X-ray tomography (CT, micro-/nano-CT, synchrotron),[58] [59] [60] neutron tomography[61] and other acquisition devices (MRI, radiography, GPR)
- Geometric models (such as point sets, line sets, surfaces, grids)
- Numerical simulation data [62] [63] [64] [65] (such as Computational fluid dynamics or Finite element analysis data)
- Molecular data
- Time series and animations [66]
- Seismic data[67]
- Well logs
- 4D Multivariate Climate Models [68] [69]
2D/3D data visualization: [70] [71] [72]
Image processing:[83] [84] [85] [86] [87] [88]
3D models reconstruction:[99] [100] [101] [102] [103] [104] [105]
Quantification and analysis:[111] [112] [113] [114] [115] [116] [117] [118] [119]
Material properties computation, based on 3D images:
- Absolute permeability
- Thermal conductivity
- Molecular diffusivity
- Electrical resistivity/formation factor
3D image-based meshing for CFD and FEA:[125]
- From 3D imaging modalities (CT, micro-CT, MRI, etc.) [126] [127]
- Surface and volume meshes generation [128]
- Export to FEA and CFD solvers for simulation
- Post-processing for simulation analysis
Presentation, automation:
Avizo is based on Open Inventor 3D graphics toolkits (FEI Visualization Sciences Group).
External links
Notes and References
- Web site: Visual and Data-centric Computing . www.zib.de . Zuse Institute Berlin (ZIB).
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- Volume Edit and Thresholding – By Elise Orellana (LSU Honors Class 3035, Spring'11, Student Project Showcase)The Use of Metal Markers In 3D Imaging – By Caroline Blevins (LSU Honors Class 3035, Spring'11, Student Project Showcase)Using 3D Reconstruction to Illustrate the Cranio-cervical Envelope in the Alligator – By Brooke Hopkins (LSU Honors Class 3035, Spring'11, Student Project Showcase)Visualization and Analysis of the Human Shoulder Suspensory Apparatus – By Michelle Osborn (LSU Honors Class 3035, Spring'11, Student Project Showcase)Web site: CCT - Advanced Visualization Serive Laboratory . 2011-06-30 . dead . https://web.archive.org/web/20110927150646/http://www.cct.lsu.edu/~jinghuage/gallery.html . 2011-09-27 .
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- Enhancing Appalachian Coalbed Methane Extraction by Microwave-Induced Fractures, by Jonathan P. Mathews – The Pennsylvania State University Web site: Archived copy . 2011-09-05 . dead . https://web.archive.org/web/20120331182343/http://www.rpsea.org/attachments/contentmanagers/3480/07122-27-FR-Enhancing_Appalachian_Coalbed_Methane_Extraction_Microwave_Induced_Fractures-08-23-10_P.pdf . 2012-03-31 .
- FRACTURING CONTROLLED PRIMARY MIGRATION OF HYDROCARBONS FLUIDS DURING HEATING OF ORGANIC-RICH SHALES, by Maya Kobchenko (1), Hamed Panahi (1)(2), François Renard (1)(3), Dag K. Dysthe (1), Anders Malthe-Sørenssen (1), Adriano Mazzini (1), Julien Scheibert (1), Bjørn Jamtveit (1) and Paul Meakin (1) (4) (5) – (1) Physics of Geological Processes, University of Oslo, Norway; (2) Statoil ASA, Norway; (3) Institut des Sciences de la Terre, Université Joseph Fourier-CNRS, Grenoble, France; (4) Idaho National Laboratory, Idaho Falls, USA; (5) Institute for Energy Technology, Kjeller, Norway http://hal.archives-ouvertes.fr/docs/00/55/48/79/PDF/GRL_submission_arXiv.pdf
- VISUALIZATION AND QUANTIFICATION OF BIOFILM ARCHITECTURE WITHIN POROUS MEDIA USING SYNCHROTRON BASED X-RAY COMPUTED MICROTOMOGRAPHY, by Gabriel Iltis, Ryan Armstrong, and Dorthe Wildenschild – Dpt of Chemical, Biological and Environmental Engineering, Oregon State University, USA Web site: Archived copy . 2010-12-17 . dead . https://web.archive.org/web/20110927224938/http://web.engr.oregonstate.edu/~wildensd/GeoX2010_poster_Final.pdf . 2011-09-27 .
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- SIMULATIONS ET ANALYSES 2D-3D DE LA POROSITE DE DEPOTS PLASMA D'ALUMINE POUR LA CARACTERISATION DE PROPRIETES MECANIQUES ET PHYSIQUES by Vincent Guipont, Centre des Matériaux, CNRS (France) Web site: Archived copy . 2010-07-21 . dead . https://web.archive.org/web/20110720212404/http://www.mrct.cnrs.fr/PF/Ateliers/Atelier2009/Simulations3D.pdf . 2011-07-20 .
- Identification des propriétés des tissus mous de la jambe sous compression élastique, by L. Dubuis (1), S. Avril (1), P. Badel (1), J. Debayle (2) – (1) LCG, École des Mines de Saint-Étienne (France), (2) LPMG, École des Mines de Saint-Étienne (France)http://hal.archives-ouvertes.fr/docs/00/59/27/37/PDF/ar_77G49DQ4.pdf
- 10.1016/j.ijfatigue.2011.06.010. Microtomographic study and finite element analysis of the porosity harmfulness in a cast aluminium alloy. 2011. Vanderesse. N.. Maire. É.. Chabod. A.. Buffière. J.-Y.. International Journal of Fatigue. 33. 12. 1514–1525.
- Transport Phenomena on the Channel-Rib Scale of Polymer Electrolyte Fuel Cells, by Reto Fluckiger – ETH Zurich http://e-collection.library.ethz.ch/eserv/eth:344/eth-344-02.pdf
- ONE-MONTH SIMULATED PLANET SIMULATOR CIRCULATION, Meteorologisches Institut, Universität Hamburg (Germany)Web site: Meteorologisches Institut: One month simulated Planet Simulator circulation . 2010-01-31 . dead . https://web.archive.org/web/20110719103741/http://www.mi.uni-hamburg.de/6472.0.html . 2011-07-19 .
- VISUALISATION IMMERSIVE ET INTERACTION HAPTIQUE : UNE REVOLUTION POUR LES GEOSCIENCES, by BRGM (Bureau des recherches géologiques et minières, France)http://interstices.info/jcms/c_14745/visualisation-immersive-et-interaction-haptique-une-revolution-pour-les-geosciences