See main article: Athletics at the 2008 Summer Paralympics.
The Men's 5,000m T46 had its Final held on September 13 at 10:05.
| Place | width=250 | Athlete ! | width=100 | Final |
|---|---|---|---|---|
| 1 | 14:20.88 WR | |||
| 2 | 14:38.96 | |||
| 3 | 14:43.78 | |||
| 4 | 14:59.41 | |||
| 5 | 15:07.95 | |||
| 6 | 15:25.26 | |||
| 7 | 15:28.19 | |||
| 8 | 15:28.30 | |||
| 9 | 15:32.32 | |||
| 10 | 15:35.44 | |||
| 11 | 15:36.95 | |||
| 12 | 15:39.00 | |||
| 13 | 16:17.62 | |||
| DNF | ||||
| DNF | ||||